PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID LPERR01G28830.1
Organism
Leersia perrieri
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Poales; Poaceae; BOP clade; Oryzoideae; Oryzeae; Oryzinae; Leersia
Family bHLH
Protein Properties Length: 404aa    MW: 42804.5 Da    PI: 6.5793
Description bHLH family protein
Gene Model
Gene Model ID Type Source Coding Sequence
LPERR01G28830.1genomeOGEView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1HLH171.1e-052943311254
                      HHHHHHHHHHHHHCTSCCC...TTS-STCHHHHHHHHHHHHHH CS
              HLH  12 RRdriNsafeeLrellPkaskapskKlsKaeiLekAveYIksL 54 
                      R +++ +++  L++l+ +      +K + a++L +A+eYIk L
  LPERR01G28830.1 294 RKEKLGDRITALQQLVSPF-----GKTDTASVLHEAIEYIKFL 331
                      677888999*******998.....8****************98 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
PROSITE profilePS5088811.731282331IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
CDDcd000835.68E-6292336No hitNo description
SuperFamilySSF474591.96E-11292345IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
SMARTSM003530.0035293337IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
Gene3DG3DSA:4.10.280.103.0E-9296339IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0046983Molecular Functionprotein dimerization activity
Sequence ? help Back to Top
Protein Sequence    Length: 404 aa     Download sequence    Send to blast
MADEWWSASQ RGHGTSACSA APPLTDRASS CGWTSPAAAA AAESTSSITF QDPSRCSTTT  60
HHHQQPLYDA ASSLGDPHMD WTQAFLSGRT DASFQAVLQD DMAASTRPFR AQTTTAVIDE  120
SAMNNPFRDM GMSQGLLLDQ VSSLASSAPY GTVQLQGMSF DGAGDQPVAA AHHSITTTFG  180
DYQHSASYDA AAAMQFAQTP SPSLPAAAQM QFSSSGSYQL PFGGAPLPSQ LLLQAMQPKP  240
SCSSNANTLM AKSNSGSAQQ ACSSAGRKSV PDSPAAAKRP RIEAPSPLPT FKVRKEKLGD  300
RITALQQLVS PFGKTDTASV LHEAIEYIKF LHEQVASLSS PYLKNGNPLQ QFQQKGSEST  360
KDTGEAKPDL RSRGLCLVPV ASTYTVASET VPEFWHPTFG GTFR
Cis-element ? help Back to Top
SourceLink
PlantRegMapLPERR01G28830.1
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_006644815.10.0PREDICTED: transcription factor bHLH123-like
TrEMBLA0A0D9V6K40.0A0A0D9V6K4_9ORYZ; Uncharacterized protein
STRINGLPERR01G28830.10.0(Leersia perrieri)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MonocotsOGMP29703464
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT3G20640.13e-50bHLH family protein