PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

PlantRegMap/PlantTFDB v5.0

Plant Transcription Factor Database

Transcription Factor Information

Basic Information | Signature Domain | Sequence |

Basic Information? help Back to Top

TF ID

LPERR01G29770.2

Organism

Leersia perrieri

Taxonomic ID

77586

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Poales; Poaceae; BOP clade; Oryzoideae; Oryzeae; Oryzinae; Leersia

Family

bZIP

Protein Properties

Length: 439aa MW: 47898.7 Da PI: 6.9747

Description

bZIP family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
LPERR01G29770.2	genome	OGE	View CDS

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	bZIP_1	24.2	7.6e-08	181	204	5	28
CHHHCHHHHHHHHHHHHHHHHHHH CS bZIP_1 5 krerrkqkNReAArrsRqRKkaei 28 k rr+++NReAAr+sR+RKk e+ LPERR01G29770.2 181 KTLRRLAQNREAARKSRLRKKIET 204 788*****************9776 PP

Protein Features ? help Back to Top

Database	Entry ID	E-value	Start	End	InterPro ID	Description
Gene3D	G3DSA:1.20.5.170	6.2E-6	172	211	No hit	No description
PROSITE pattern	PS00036	0	184	199	IPR004827	Basic-leucine zipper domain
Pfam	PF14144	3.7E-33	237	311	IPR025422	Transcription factor TGA like domain

Gene Ontology ? help Back to Top
GO Term	GO Category	GO Description
GO:0006355	Biological Process	regulation of transcription, DNA-templated
GO:0009410	Biological Process	response to xenobiotic stimulus
GO:0009627	Biological Process	systemic acquired resistance
GO:0003700	Molecular Function	transcription factor activity, sequence-specific DNA binding
GO:0043565	Molecular Function	sequence-specific DNA binding

Sequence ? help Back to Top
Protein Sequence Length: 439 aa Download sequence Send to blast
MESRLGVPVS SAAAAENARG GMSGFAAPQH ATHNNMQPSQ VTDFGALAQS AGFRIEDLTN 60 LSTNTLFNLK SNAHTIINDS LQFGNYGKSI SPSNITTTAA VPVVDPEALV PQKGAQLNLV 120 TIRTGNVENW GESTMADTSP RTDTSTDPDT DERNQMFEQG QLADPTASDS SDRSKDKLDH 180 KTLRRLAQNR EAARKSRLRK KIETYSVRAR ASSGSSTGAL AFDMEYARWL EEHNKYINEL 240 RAAVNAHASD TDLRSIVDNI MAHYDEIFKL KGVAAKADVF HVLSGMWKTP AERCFMWLGG 300 FRSSELLKLL AGQLEPLTEQ QLAGIANLQQ SSQQAEDALS QGMEALQQSL AETLASGSLG 360 PAGSSGNVAN YMGQMAMAMG KLGTLENFLR QADNLRLQTL QQMQRILTTR QSARALLAIS 420 DYFSRLRALS SLWLARPRE

Sequence ? help Back to Top

Protein Sequence Length: 439 aa Download sequence Send to blast

MESRLGVPVS SAAAAENARG GMSGFAAPQH ATHNNMQPSQ VTDFGALAQS AGFRIEDLTN  60
LSTNTLFNLK SNAHTIINDS LQFGNYGKSI SPSNITTTAA VPVVDPEALV PQKGAQLNLV  120
TIRTGNVENW GESTMADTSP RTDTSTDPDT DERNQMFEQG QLADPTASDS SDRSKDKLDH  180
KTLRRLAQNR EAARKSRLRK KIETYSVRAR ASSGSSTGAL AFDMEYARWL EEHNKYINEL  240
RAAVNAHASD TDLRSIVDNI MAHYDEIFKL KGVAAKADVF HVLSGMWKTP AERCFMWLGG  300
FRSSELLKLL AGQLEPLTEQ QLAGIANLQQ SSQQAEDALS QGMEALQQSL AETLASGSLG  360
PAGSSGNVAN YMGQMAMAMG KLGTLENFLR QADNLRLQTL QQMQRILTTR QSARALLAIS  420
DYFSRLRALS SLWLARPRE

Functional Description ? help Back to Top
Source	Description
UniProt	Transcriptional regulator involved in defense response. {ECO:0000250\|UniProtKB:Q7X993}.

Binding Motif ? help Back to Top
Motif ID	Method	Source	Motif file
MP00349	DAP	Transfer from AT3G12250	Download

Cis-element ? help Back to Top
Source	Link
PlantRegMap	LPERR01G29770.2

Regulation -- PlantRegMap ? help Back to Top
Source	Upstream Regulator	Target Gene
PlantRegMap	Retrieve	Retrieve

Annotation -- Nucleotide ? help Back to Top
Source	Hit ID	E-value	Description
GenBank	AB051297	0.0	AB051297.1 Oryza sativa OsNIF4 mRNA for bZIP transcription factor, complete cds.
GenBank	AY620415	0.0	AY620415.1 Oryza sativa (japonica cultivar-group) clone P0702B09 bZIP transcription factor mRNA, complete cds.

Annotation -- Protein ? help Back to Top
Source	Hit ID	E-value	Description
Refseq	XP_006644874.2	0.0	PREDICTED: transcription factor HBP-1b(c1)-like isoform X2
Swissprot	Q6IVC2	0.0	TGAL1_ORYSJ; Transcription factor TGAL1
TrEMBL	A0A0D9V6X3	0.0	A0A0D9V6X3_9ORYZ; Uncharacterized protein
STRING	LPERR01G29770.1	0.0	(Leersia perrieri)

Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID	E-value	Description
AT5G06950.4	1e-112	bZIP family protein

Publications ? help Back to Top
Kikuchi S, et al. Collection, mapping, and annotation of over 28,000 cDNA clones from japonica rice. Science, 2003. 301(5631): p. 376-9 [PMID:12869764] Chern M, et al. Interaction specificity and coexpression of rice NPR1 homologs 1 and 3 (NH1 and NH3), TGA transcription factors and Negative Regulator of Resistance (NRR) proteins. BMC Genomics, 2014. 15: p. 461 [PMID:24919709]