PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

PlantRegMap/PlantTFDB v5.0

Plant Transcription Factor Database

Transcription Factor Information

Basic Information | Signature Domain | Sequence |

Basic Information? help Back to Top

TF ID

LPERR01G30010.1

Organism

Leersia perrieri

Taxonomic ID

77586

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Poales; Poaceae; BOP clade; Oryzoideae; Oryzeae; Oryzinae; Leersia

Family

bZIP

Protein Properties

Length: 367aa MW: 39937 Da PI: 10.4981

Description

bZIP family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
LPERR01G30010.1	genome	OGE	View CDS

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	bZIP_1	47.1	5.2e-15	260	303	5	48
CHHHCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH CS bZIP_1 5 krerrkqkNReAArrsRqRKkaeieeLeekvkeLeaeNkaLkke 48 +r++r++kNRe+A rsR+RK+a++ eLe+kv Le+eN +Lk + LPERR01G30010.1 260 RRQKRMIKNRESAARSRARKQAYTNELENKVSRLEEENVRLKRQ 303 69*************************************99954 PP

Protein Features ? help Back to Top

Database	Entry ID	E-value	Start	End	InterPro ID	Description
SMART	SM00338	3.0E-13	256	331	IPR004827	Basic-leucine zipper domain
PROSITE profile	PS50217	11.323	258	303	IPR004827	Basic-leucine zipper domain
Gene3D	G3DSA:1.20.5.170	4.6E-13	258	303	No hit	No description
SuperFamily	SSF57959	4.25E-11	260	306	No hit	No description
Pfam	PF00170	5.6E-12	260	303	IPR004827	Basic-leucine zipper domain
CDD	cd14707	8.05E-24	260	304	No hit	No description
PROSITE pattern	PS00036	0	263	278	IPR004827	Basic-leucine zipper domain

Gene Ontology ? help Back to Top
GO Term	GO Category	GO Description
GO:0006355	Biological Process	regulation of transcription, DNA-templated
GO:0003700	Molecular Function	transcription factor activity, sequence-specific DNA binding
GO:0043565	Molecular Function	sequence-specific DNA binding

Sequence ? help Back to Top
Protein Sequence Length: 367 aa Download sequence Send to blast
MASNTGGAAA QRGRMPSLGR QGSLYSLTLD EVQSHLGEPL HSMNLDELLR SVFPDGVAAA 60 GGGGIQRREQ SSGLSRQGSI AMPPELSKKT VDEVWKGIQA APKRRNGAET GGRRRRQRQP 120 TLGEVTLEDF LVKAGVVTQG SLKEMGDGDA SGNVDPVGRG VAVAGTADLA SGAQWIERYK 180 QQIAATADVH QHGQQSVQGV YMTNRLVPQP VNVGPGAVLE PSYSDGQASS GMIGGISDSQ 240 TPGRKRGMFS GDVADKLIER RQKRMIKNRE SAARSRARKQ AYTNELENKV SRLEEENVRL 300 KRQKNAANCP SPRTKSWMKY FVLSLYQNPS INSGEQAQRI SDLTRLQGAF YFVDFKVFFL 360 LSFASWV

Sequence ? help Back to Top

Protein Sequence Length: 367 aa Download sequence Send to blast

MASNTGGAAA QRGRMPSLGR QGSLYSLTLD EVQSHLGEPL HSMNLDELLR SVFPDGVAAA  60
GGGGIQRREQ SSGLSRQGSI AMPPELSKKT VDEVWKGIQA APKRRNGAET GGRRRRQRQP  120
TLGEVTLEDF LVKAGVVTQG SLKEMGDGDA SGNVDPVGRG VAVAGTADLA SGAQWIERYK  180
QQIAATADVH QHGQQSVQGV YMTNRLVPQP VNVGPGAVLE PSYSDGQASS GMIGGISDSQ  240
TPGRKRGMFS GDVADKLIER RQKRMIKNRE SAARSRARKQ AYTNELENKV SRLEEENVRL  300
KRQKNAANCP SPRTKSWMKY FVLSLYQNPS INSGEQAQRI SDLTRLQGAF YFVDFKVFFL  360
LSFASWV

Nucleic Localization Signal ? help Back to Top

No.	Start	End	Sequence
1	111	118	GRRRRQRQ

Functional Description ? help Back to Top
Source	Description
UniProt	Binds to the embryo specification element and the ABA-responsive element (ABRE) of the Dc3 gene promoter. Could participate in abscisic acid-regulated gene expression during seed development.

Cis-element ? help Back to Top
Source	Link
PlantRegMap	LPERR01G30010.1

Regulation -- PlantRegMap ? help Back to Top
Source	Upstream Regulator	Target Gene
PlantRegMap	Retrieve	-

Annotation -- Protein ? help Back to Top
Source	Hit ID	E-value	Description
Refseq	XP_015627754.1	1e-155	ABSCISIC ACID-INSENSITIVE 5-like protein 2
Swissprot	Q9LES3	3e-70	AI5L2_ARATH; ABSCISIC ACID-INSENSITIVE 5-like protein 2
TrEMBL	A0A0D9V707	0.0	A0A0D9V707_9ORYZ; Uncharacterized protein
STRING	LPERR01G30010.1	0.0	(Leersia perrieri)

Orthologous Group ? help Back to Top
Lineage	Orthologous Group ID	Taxa Number	Gene Number
Monocots	OGMP2707	38	83

Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID	E-value	Description
AT3G56850.1	2e-69	ABA-responsive element binding protein 3

Publications ? help Back to Top
Kim H, et al. ABA-HYPERSENSITIVE BTB/POZ PROTEIN 1 functions as a negative regulator in ABA-mediated inhibition of germination in Arabidopsis. Plant Mol. Biol., 2016. 90(3): p. 303-15 [PMID:26667153] Song C,Kim T,Chung WS,Lim CO The Arabidopsis Phytocystatin AtCYS5 Enhances Seed Germination and Seedling Growth under Heat Stress Conditions. Mol. Cells, 2017. 40(8): p. 577-586 [PMID:28756655]