PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID LPERR01G30470.1
Organism
Leersia perrieri
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Poales; Poaceae; BOP clade; Oryzoideae; Oryzeae; Oryzinae; Leersia
Family WRKY
Protein Properties Length: 184aa    MW: 20360 Da    PI: 5.7241
Description WRKY family protein
Gene Model
Gene Model ID Type Source Coding Sequence
LPERR01G30470.1genomeOGEView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1WRKY39.21.4e-122491558
                     -TT-SS-EEEEEE-ST...T---EEEEEE-.SSSTTEEEEEEES--SS CS
             WRKY 15 vkgsefprsYYrCtsa...gCpvkkkvers.aedpkvveitYegeHnh 58
                     ++g+ fpr YYrCt++   gCp+ k+ve+  +edp ++ ++ ++eH++
  LPERR01G30470.1  2 IRGKAFPRCYYRCTYHqdhGCPASKHVEQHnSEDPPLFRVIHTNEHTC 49
                     89*************98999*******9852689************98 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
PROSITE profilePS5081111.864152IPR003657WRKY domain
SMARTSM007743.8E-13151IPR003657WRKY domain
Gene3DG3DSA:2.20.25.802.5E-11150IPR003657WRKY domain
SuperFamilySSF1182905.23E-11251IPR003657WRKY domain
PfamPF031067.9E-13249IPR003657WRKY domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0006355Biological Processregulation of transcription, DNA-templated
GO:0003700Molecular Functiontranscription factor activity, sequence-specific DNA binding
GO:0043565Molecular Functionsequence-specific DNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 184 aa     Download sequence    Send to blast
MIRGKAFPRC YYRCTYHQDH GCPASKHVEQ HNSEDPPLFR VIHTNEHTCG TSTFASDFMA  60
SSVQIQQIAD ASLRKQAEVE RPPMMQVQYR CSGGYSMAMK EEKDAIVSSL LTVITGCHIA  120
ESDDNAVALP VAGCNHQSGS SAVSPALLPA LDDLKLDFML ESVLEPHWVE PLDLAWFKEP  180
THTG
Cis-element ? help Back to Top
SourceLink
PlantRegMapLPERR01G30470.1
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Nucleotide ? help Back to Top
Source Hit ID E-value Description
GenBankAP0033029e-70AP003302.2 Oryza sativa Japonica Group genomic DNA, chromosome 1, PAC clone:P0703B11.
GenBankAP0149579e-70AP014957.1 Oryza sativa Japonica Group DNA, chromosome 1, cultivar: Nipponbare, complete sequence.
GenBankCP0126099e-70CP012609.1 Oryza sativa Indica Group cultivar RP Bio-226 chromosome 1 sequence.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_015642042.19e-98probable WRKY transcription factor 64
TrEMBLA0A0D9V7751e-137A0A0D9V775_9ORYZ; Uncharacterized protein
STRINGLPERR01G30470.11e-137(Leersia perrieri)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MonocotsOGMP118143139
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT2G40740.17e-12WRKY DNA-binding protein 55