PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID LPERR01G30500.1
Organism
Leersia perrieri
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Poales; Poaceae; BOP clade; Oryzoideae; Oryzeae; Oryzinae; Leersia
Family WRKY
Protein Properties Length: 276aa    MW: 29356.7 Da    PI: 4.9879
Description WRKY family protein
Gene Model
Gene Model ID Type Source Coding Sequence
LPERR01G30500.1genomeOGEView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1WRKY74.31.5e-23107165258
                      --SS-EEEEEEE--TT-SS-EEEEEE-ST..T---EEEEEE-SSSTTEEEEEEES--SS CS
             WRKY   2 dDgynWrKYGqKevkgsefprsYYrCtsa..gCpvkkkversaedpkvveitYegeHnh 58 
                       Dg+ WrKYGqKe++g ++pr YYrC+++  gC ++++v++s+++p ++ i Y g+H++
  LPERR01G30500.1 107 ADGFIWRKYGQKEINGCKHPRLYYRCAFRahGCAATRRVQQSQDNPAAFLIAYYGDHTC 165
                      6***************************999**************************98 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
Gene3DG3DSA:2.20.25.808.1E-2499166IPR003657WRKY domain
PROSITE profilePS5081119.508101163IPR003657WRKY domain
SuperFamilySSF1182903.79E-22103166IPR003657WRKY domain
SMARTSM007744.0E-31106167IPR003657WRKY domain
PfamPF031062.6E-23108165IPR003657WRKY domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0006355Biological Processregulation of transcription, DNA-templated
GO:0003700Molecular Functiontranscription factor activity, sequence-specific DNA binding
GO:0043565Molecular Functionsequence-specific DNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 276 aa     Download sequence    Send to blast
MALGSPAAVV VELMAMGQQS AAHLGELLRA TSSSSPSQLC EQQELAAEIL RCCGRVIAQL  60
SRVPTTANNK RKAVDSTTTS SLPATPPSKK RARGGEAARE VRNETTADGF IWRKYGQKEI  120
NGCKHPRLYY RCAFRAHGCA ATRRVQQSQD NPAAFLIAYY GDHTCGGEAA IAAATCQEGD  180
GMPPAVINSG ASSNAAAAAA TADRNMGLTT LLAAAEQRSC DSETSQGWSP SFSSEMEMEM  240
EAGFDFAGAD EPWADSSPVW DFLNGSFDWE FVINSL
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
6ir8_A1e-151081651068OsWRKY45
Search in ModeBase
Cis-element ? help Back to Top
SourceLink
PlantRegMapLPERR01G30500.1
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_006644916.11e-116PREDICTED: probable WRKY transcription factor 70
TrEMBLA0A0D9V7800.0A0A0D9V780_9ORYZ; Uncharacterized protein
STRINGLPERR01G30500.10.0(Leersia perrieri)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MonocotsOGMP83223147
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT2G46400.13e-19WRKY DNA-binding protein 46