PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID LPERR01G31460.1
Organism
Leersia perrieri
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Poales; Poaceae; BOP clade; Oryzoideae; Oryzeae; Oryzinae; Leersia
Family C2H2
Protein Properties Length: 214aa    MW: 22758.1 Da    PI: 8.9243
Description C2H2 family protein
Gene Model
Gene Model ID Type Source Coding Sequence
LPERR01G31460.1genomeOGEView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1zf-C2H211.10.00135678123
                     EEETTTTEEESSHHHHHHHHHHT CS
          zf-C2H2  1 ykCpdCgksFsrksnLkrHirtH 23
                     ++C+ C++ F++   L  H  +H
  LPERR01G31460.1 56 FECKTCNRQFPTFQALGGHRASH 78
                     89**********99999998887 PP
2zf-C2H210.70.0017118140123
                      EEETTTTEEESSHHHHHHHHHHT CS
          zf-C2H2   1 ykCpdCgksFsrksnLkrHirtH 23 
                      ++Cp Cg  F+    L  H+r+H
  LPERR01G31460.1 118 HECPVCGLEFPIGQALGGHMRRH 140
                      79*******************99 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
SuperFamilySSF576679.45E-85478No hitNo description
PfamPF139121.1E-125580IPR007087Zinc finger, C2H2
PROSITE profilePS5015710.1185683IPR007087Zinc finger, C2H2
SMARTSM003550.185678IPR015880Zinc finger, C2H2-like
PROSITE patternPS0002805878IPR007087Zinc finger, C2H2
SuperFamilySSF576679.45E-8113140No hitNo description
PfamPF139124.1E-11117142IPR007087Zinc finger, C2H2
SMARTSM003550.14118140IPR015880Zinc finger, C2H2-like
PROSITE profilePS501579.806118145IPR007087Zinc finger, C2H2
PROSITE patternPS000280120140IPR007087Zinc finger, C2H2
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0046872Molecular Functionmetal ion binding
Sequence ? help Back to Top
Protein Sequence    Length: 214 aa     Download sequence    Send to blast
MSKRSRSMWE MQEIIGSVDT ARVLMLLASQ QSHHHGMVAH PVAVRAAAAP HDARVFECKT  60
CNRQFPTFQA LGGHRASHKR PRQQQQHRHG ALVAGDDAGL CLGRHPAQPQ QPAKPRVHEC  120
PVCGLEFPIG QALGGHMRRH RAEAEATATT GNADVVKAAP AVNVKACDGG GVCLDLNLTP  180
SENCAKCRNV VGQLGGAAGQ GGVHKALAML DCFL
Cis-element ? help Back to Top
SourceLink
PlantRegMapLPERR01G31460.1
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_015633806.13e-85zinc finger protein ZAT12
TrEMBLA0A0D9V7K71e-154A0A0D9V7K7_9ORYZ; Uncharacterized protein
STRINGLPERR01G31460.11e-155(Leersia perrieri)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MonocotsOGMP62822138
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT2G28710.19e-26C2H2 family protein