PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
Home  TFext  BLAST  Prediction  Download  Help  About  Links  PlantRegMap
(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID LPERR01G31590.1
Organism
Leersia perrieri
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Poales; Poaceae; BOP clade; Oryzoideae; Oryzeae; Oryzinae; Leersia
Family WOX
Protein Properties Length: 269aa    MW: 29234.1 Da    PI: 9.941
Description WOX family protein
Gene Model
Gene Model ID Type Source Coding Sequence
LPERR01G31590.1genomeOGEView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1Homeobox62.56.5e-202887357
                     --SS--HHHHHHHHHHHHH.SSS--HHHHHHHHHHC....TS-HHHHHHHHHHHHHHHHC CS
         Homeobox  3 kRttftkeqleeLeelFek.nrypsaeereeLAkkl....gLterqVkvWFqNrRakekk 57
                      R+t+tkeq+ +L  l+++  r+p+ae++++++++l    +++ ++V++WFqN++a++++
  LPERR01G31590.1 28 ARWTPTKEQIAVLDGLYRQgLRTPTAEQIQQITARLrehgHIEGKNVFYWFQNHKARQRQ 87
                     7*****************99**************************************96 PP
2Wus_type_Homeobox114.45.5e-372789365
  Wus_type_Homeobox  3 rtRWtPtpeQikiLeelyksGlrtPnkeeiqritaeLeeyGkiedkNVfyWFQNrkaRerqkq 65
                       ++RWtPt+eQi +L+ ly++GlrtP++e+iq+ita+L+e+G+ie+kNVfyWFQN+kaR+rqkq
    LPERR01G31590.1 27 NARWTPTKEQIAVLDGLYRQGLRTPTAEQIQQITARLREHGHIEGKNVFYWFQNHKARQRQKQ 89
                       78***********************************************************97 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
PROSITE profilePS5007110.3172388IPR001356Homeobox domain
SMARTSM003892.2E-42592IPR001356Homeobox domain
SuperFamilySSF466897.89E-122694IPR009057Homeodomain-like
PfamPF000461.4E-172887IPR001356Homeobox domain
Gene3DG3DSA:1.10.10.604.8E-72887IPR009057Homeodomain-like
CDDcd000863.71E-42983No hitNo description
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0008284Biological Processpositive regulation of cell proliferation
GO:0009942Biological Processlongitudinal axis specification
GO:0010654Biological Processapical cell fate commitment
GO:0048825Biological Processcotyledon development
GO:0080167Biological Processresponse to karrikin
GO:0090451Biological Processcotyledon boundary formation
GO:0005634Cellular Componentnucleus
GO:0003677Molecular FunctionDNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 269 aa     Download sequence    Send to blast
MQRHHEAGLF VAEPPTSPLS PAAALANARW TPTKEQIAVL DGLYRQGLRT PTAEQIQQIT  60
ARLREHGHIE GKNVFYWFQN HKARQRQKQK QQSFDYFSKL FRRPPPLPVL HRPLAARSFP  120
LAVPPAPATA CSAAGGVMYR PPSFIPAAAN AGYYPQHQTP VIYPGMEVSP HDKATVHAMY  180
LTAPSTTRLA ERDGGRGALE TLQLFPLQPT FVLPADQKPP RAGSACAAAV SLPTPSASSS  240
YSGGSESSES PNSEALPFYD FFGVHSGGR
Functional Description ? help Back to Top
Source Description
UniProtTranscription factor which may be involved in developmental processes. {ECO:0000250}.
UniProtTranscription factor which may be involved in developmental processes. {ECO:0000250}.
Cis-element ? help Back to Top
SourceLink
PlantRegMapLPERR01G31590.1
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Nucleotide ? help Back to Top
Source Hit ID E-value Description
GenBankAP0032411e-114AP003241.3 Oryza sativa Japonica Group genomic DNA, chromosome 1, PAC clone:P0408C03.
GenBankAP0149571e-114AP014957.1 Oryza sativa Japonica Group DNA, chromosome 1, cultivar: Nipponbare, complete sequence.
GenBankCP0126091e-114CP012609.1 Oryza sativa Indica Group cultivar RP Bio-226 chromosome 1 sequence.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_015644226.16e-93WUSCHEL-related homeobox 5
SwissprotA2WWU75e-94WOX5_ORYSI; WUSCHEL-related homeobox 5
SwissprotQ8LR865e-94WOX5_ORYSJ; WUSCHEL-related homeobox 5
TrEMBLA0A0D9V7M20.0A0A0D9V7M2_9ORYZ; Uncharacterized protein
STRINGLPERR01G31590.10.0(Leersia perrieri)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MonocotsOGMP75093548
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT5G59340.11e-27WUSCHEL related homeobox 2