PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

PlantRegMap/PlantTFDB v5.0

Plant Transcription Factor Database

Transcription Factor Information

Basic Information | Signature Domain | Sequence |

Basic Information? help Back to Top

TF ID

LPERR01G32790.1

Organism

Leersia perrieri

Taxonomic ID

77586

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Poales; Poaceae; BOP clade; Oryzoideae; Oryzeae; Oryzinae; Leersia

Family

NAC

Protein Properties

Length: 256aa MW: 28374.4 Da PI: 5.0153

Description

NAC family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
LPERR01G32790.1	genome	OGE	View CDS

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	NAM	143.3	1.4e-44	9	141	2	128
NAM 2 ppGfrFhPtdeelvveyLkkkvegkkleleevikevdiykvePwdLpk.......kvkaeekewyfFskrdkkyatgkrknratksgyWkatgk 88 +pGfrF Pt+eel+++yL++k+++ + ++e+vi+ +d+y+v+Pw+L + +ee+ w++F++r++k+a+g r++r+t sgyWka g+ LPERR01G32790.1 9 APGFRFYPTEEELICFYLRNKLDSLRDDIERVIPVFDVYSVDPWQLSEihgilcaGGGEEEEPWFYFCPRQEKEARGGRPSRTTPSGYWKAAGT 102 59*************************99***********855677743223366699************************** PP NAM 89 dkevlskkgelvglkktLvfykgrapkgektdWvmheyrl 128 +v+s +++ +g+kkt+vfy+grap+g+kt+W m+eyr+ LPERR01G32790.1 103 PGAVYS-DRRPIGMKKTMVFYRGRAPSGTKTNWKMNEYRA 141 **.999**************************95 PP

Protein Features ? help Back to Top

Database	Entry ID	E-value	Start	End	InterPro ID	Description
SuperFamily	SSF101941	9.02E-49	6	182	IPR003441	NAC domain
PROSITE profile	PS51005	46.189	8	182	IPR003441	NAC domain
Pfam	PF02365	3.4E-24	10	140	IPR003441	NAC domain

Gene Ontology ? help Back to Top
GO Term	GO Category	GO Description
GO:0006355	Biological Process	regulation of transcription, DNA-templated
GO:0005634	Cellular Component	nucleus
GO:0003677	Molecular Function	DNA binding

Sequence ? help Back to Top
Protein Sequence Length: 256 aa Download sequence Send to blast
MADGGHHRAP GFRFYPTEEE LICFYLRNKL DSLRDDIERV IPVFDVYSVD PWQLSEIHGI 60 LCAGGGEEEE PWFYFCPRQE KEARGGRPSR TTPSGYWKAA GTPGAVYSDR RPIGMKKTMV 120 FYRGRAPSGT KTNWKMNEYR AFHYADAAST GAGASSSSGA AAQPSLPPQL RSEFSLCRLY 180 TKSGCQRQFD RRPLAGCHDE NPGPSTAAAA VSPEENDGSD NSMQQQQQEL IDQGGAIDPD 240 WDDVATLTAF LYWPGD

3D Structure ? help Back to Top

PDB ID	Evalue	Query Start	Query End	Hit Start	Hit End	Description
1ut4_A	1e-30	10	143	19	144	NO APICAL MERISTEM PROTEIN
1ut4_B	1e-30	10	143	19	144	NO APICAL MERISTEM PROTEIN
1ut7_A	1e-30	10	143	19	144	NO APICAL MERISTEM PROTEIN
1ut7_B	1e-30	10	143	19	144	NO APICAL MERISTEM PROTEIN
3swm_A	2e-30	10	143	22	147	NAC domain-containing protein 19
3swm_B	2e-30	10	143	22	147	NAC domain-containing protein 19
3swm_C	2e-30	10	143	22	147	NAC domain-containing protein 19
3swm_D	2e-30	10	143	22	147	NAC domain-containing protein 19
3swp_A	2e-30	10	143	22	147	NAC domain-containing protein 19
3swp_B	2e-30	10	143	22	147	NAC domain-containing protein 19
3swp_C	2e-30	10	143	22	147	NAC domain-containing protein 19
3swp_D	2e-30	10	143	22	147	NAC domain-containing protein 19
4dul_A	1e-30	10	143	19	144	NAC domain-containing protein 19
4dul_B	1e-30	10	143	19	144	NAC domain-containing protein 19
Search in ModeBase

Cis-element ? help Back to Top
Source	Link
PlantRegMap	LPERR01G32790.1

Regulation -- PlantRegMap ? help Back to Top
Source	Upstream Regulator	Target Gene
PlantRegMap	Retrieve	-

Annotation -- Protein ? help Back to Top
Source	Hit ID	E-value	Description
Refseq	XP_015632691.1	1e-133	NAC domain-containing protein 90 isoform X2
Swissprot	Q9FMR3	6e-66	NAC90_ARATH; NAC domain-containing protein 90
TrEMBL	A0A0D9V840	0.0	A0A0D9V840_9ORYZ; Uncharacterized protein
STRING	LPERR01G32790.1	0.0	(Leersia perrieri)

Orthologous Group ? help Back to Top
Lineage	Orthologous Group ID	Taxa Number	Gene Number
Monocots	OGMP1005	38	140

Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID	E-value	Description
AT5G22380.1	9e-67	NAC domain containing protein 90

Publications ? help Back to Top
Duarte JM, et al. Expression pattern shifts following duplication indicative of subfunctionalization and neofunctionalization in regulatory genes of Arabidopsis. Mol. Biol. Evol., 2006. 23(2): p. 469-78 [PMID:16280546]