PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID LPERR01G33110.1
Organism
Leersia perrieri
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Poales; Poaceae; BOP clade; Oryzoideae; Oryzeae; Oryzinae; Leersia
Family ERF
Protein Properties Length: 391aa    MW: 40727.3 Da    PI: 5.3325
Description ERF family protein
Gene Model
Gene Model ID Type Source Coding Sequence
LPERR01G33110.1genomeOGEView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1AP262.59.2e-20169218255
              AP2   2 gykGVrwdkkrgrWvAeIrdpsengkr..krfslgkfgtaeeAakaaiaarkkleg 55 
                      +y+GVr+++ +g+W+AeIrdp     +  +r++lg+f tae Aa+a+++a+++++g
  LPERR01G33110.1 169 RYRGVRQRP-WGKWAAEIRDP-----HkaARVWLGTFETAEAAARAYDEAALRFRG 218
                      7********.**********7.....337************************998 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
SMARTSM003801.8E-37169232IPR001471AP2/ERF domain
PROSITE profilePS5103225.686169226IPR001471AP2/ERF domain
SuperFamilySSF541713.47E-22169227IPR016177DNA-binding domain
Gene3DG3DSA:3.30.730.109.7E-33169227IPR001471AP2/ERF domain
PfamPF008471.3E-13169218IPR001471AP2/ERF domain
PRINTSPR003671.3E-11170181IPR001471AP2/ERF domain
CDDcd000187.90E-15177228No hitNo description
PRINTSPR003671.3E-11192208IPR001471AP2/ERF domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0006355Biological Processregulation of transcription, DNA-templated
GO:0005634Cellular Componentnucleus
GO:0003677Molecular FunctionDNA binding
GO:0003700Molecular Functiontranscription factor activity, sequence-specific DNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 391 aa     Download sequence    Send to blast
MRDEAAATLM CFDLADQRGP RGGGGWPVKG GDDDGEYVGR AAAAAAATAM TLAGASELMS  60
GYYQAQEMST MVSALARVVA GGDGEPDQWS WPAPSPPSSS AAAWAAHGGS GVQERSREEQ  120
AMHAYGGVPS PEFAGSEQSS DTQSASAAAM EDHHSPVAGE GGPDTPRRRY RGVRQRPWGK  180
WAAEIRDPHK AARVWLGTFE TAEAAARAYD EAALRFRGSR AKLNFPEDAR LSTTATAPPP  240
PAPIATASAS PDIYPGATAA AQSSDYLYHQ MLLQGRHTHT AAATNNQGGL LPFYGGGGSM  300
SNPYGGGAMS GFLGSYYSFP TSSVSVATVP SSASSTSGYY YPSSHGGDSH QSVAAAEEWN  360
WENALVYPAT ATAASWSDSS YHNPPPPHTQ Q
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
2gcc_A5e-23170226663ATERF1
3gcc_A5e-23170226663ATERF1
Search in ModeBase
Cis-element ? help Back to Top
SourceLink
PlantRegMapLPERR01G33110.1
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Nucleotide ? help Back to Top
Source Hit ID E-value Description
GenBankAP0032861e-118AP003286.3 Oryza sativa Japonica Group genomic DNA, chromosome 1, PAC clone:P0677H08.
GenBankAP0149571e-118AP014957.1 Oryza sativa Japonica Group DNA, chromosome 1, cultivar: Nipponbare, complete sequence.
GenBankCP0126091e-118CP012609.1 Oryza sativa Indica Group cultivar RP Bio-226 chromosome 1 sequence.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_015613619.11e-112ethylene-responsive transcription factor ABR1
TrEMBLA0A0D9V8930.0A0A0D9V893_9ORYZ; Uncharacterized protein
STRINGLPERR01G33110.10.0(Leersia perrieri)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MonocotsOGMP62322649
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT5G50080.11e-19ethylene response factor 110