PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID LPERR01G33950.1
Organism
Leersia perrieri
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Poales; Poaceae; BOP clade; Oryzoideae; Oryzeae; Oryzinae; Leersia
Family GRAS
Protein Properties Length: 555aa    MW: 61933.5 Da    PI: 4.5501
Description GRAS family protein
Gene Model
Gene Model ID Type Source Coding Sequence
LPERR01G33950.1genomeOGEView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1GRAS422.73e-1291865552374
             GRAS   2 velLlecAeavssgdlelaqalLarlselaspdgdpmqRlaayfteALaarlarsvselykalppsetseknsseelaalklfsevsPilkfsh 95 
                      ++lL++cA a+s+ +  +aqa+++ l++++s +gdp qR+aay++e+Laar++ s++++ykal+++e++   +  +l+a+++++e++P+++f++
  LPERR01G33950.1 186 KQLLFDCAAALSDYNVDEAQAIITDLRQMVSIQGDPSQRIAAYLVEGLAARIVASGTGIYKALSCKEAP---TLYQLSAMQILFEICPCFRFGF 276
                      589*****************************************************************9...89999***************** PP

             GRAS  96 ltaNqaIleavegeervHiiDfdisqGlQWpaLlqaLasRpegppslRiTgvgspesg..skeeleetgerLakfAeelgvpfefnvlvakrle 187
                      ++aN aIle  ++e+r+HiiDfdi+qG Q+++L+q L + +++p +lRiTgv++pe++      l+ +g+rL+k+Ae +gv+fef++ v  ++ 
  LPERR01G33950.1 277 MAANYAILEVCKSEDRLHIIDFDINQGSQYITLIQYLKNNANKPRHLRITGVDDPETVqrTVGGLKVIGQRLEKLAEDCGVSFEFRA-VGANIG 369
                      ********************************************************99778889***********************.799*** PP

             GRAS 188 dleleeLrvkpgEalaVnlvlqlhrlldesvsleserdevLklvkslsPkvvvvveqeadhnsesFlerflealeyysalfdsleaklpresee 281
                      d+++ +L+++pgEal+Vn+++qlh+l+desvs+ +erd++L++vk+l+Pk+v++veq+a++n+++F  rf e  +yysalfdsl+a+lpres +
  LPERR01G33950.1 370 DVTPAMLDCRPGEALVVNFAFQLHHLPDESVSIMNERDQLLRMVKGLQPKLVTLVEQDANTNTAPFQIRFREVYDYYSALFDSLDATLPRESPD 463
                      ********************************************************************************************** PP

             GRAS 282 rikvErellgreivnvvacegaerrerhetlekWrerleeaGFkpvplsekaakqaklllrkvksdgyrveeesgslvlgWkdrpLvsvSaWr 374
                      r++vEr++l+reivn++aceg +r+er e ++kWr+r+++aGF+p p+s+++   +++ll+ + ++ y+ ee++g l +gW +++L++ SaW+
  LPERR01G33950.1 464 RMNVERQCLAREIVNILACEGPDRVERYEVAGKWRARMTMAGFTPCPFSSNVIGGIRSLLKSYCDR-YKFEEDRGGLHFGWGEKTLIVSSAWQ 555
                      ****************************************************************66.*************************6 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
PROSITE profilePS5098564.389159536IPR005202Transcription factor GRAS
PfamPF035141.0E-126186555IPR005202Transcription factor GRAS
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0006355Biological Processregulation of transcription, DNA-templated
Sequence ? help Back to Top
Protein Sequence    Length: 555 aa     Download sequence    Send to blast
MSFVRRADPS TTYADNLYVH KFGAPNSNFA TRRYASDTQL FHYGPEPYNS ENFYNQQASP  60
IPYMVTADGH SPASADNQSN SCSDATKDSP LVSNVSQQNS QSISDNQSSE LEVELDEDDI  120
RMKLQELEHA LLDDTDDILY EISQAGSIND EWADPMKNAL LPNSPKESES SISCAGSNIG  180
EPRTPKQLLF DCAAALSDYN VDEAQAIITD LRQMVSIQGD PSQRIAAYLV EGLAARIVAS  240
GTGIYKALSC KEAPTLYQLS AMQILFEICP CFRFGFMAAN YAILEVCKSE DRLHIIDFDI  300
NQGSQYITLI QYLKNNANKP RHLRITGVDD PETVQRTVGG LKVIGQRLEK LAEDCGVSFE  360
FRAVGANIGD VTPAMLDCRP GEALVVNFAF QLHHLPDESV SIMNERDQLL RMVKGLQPKL  420
VTLVEQDANT NTAPFQIRFR EVYDYYSALF DSLDATLPRE SPDRMNVERQ CLAREIVNIL  480
ACEGPDRVER YEVAGKWRAR MTMAGFTPCP FSSNVIGGIR SLLKSYCDRY KFEEDRGGLH  540
FGWGEKTLIV SSAWQ
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
5b3h_A2e-6319255425377Protein SCARECROW
5b3h_D2e-6319255425377Protein SCARECROW
Search in ModeBase
Functional Description ? help Back to Top
Source Description
UniProtProbable transcription factor involved in plant development. {ECO:0000250}.
Cis-element ? help Back to Top
SourceLink
PlantRegMapLPERR01G33950.1
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Nucleotide ? help Back to Top
Source Hit ID E-value Description
GenBankAK0608330.0AK060833.1 Oryza sativa Japonica Group cDNA clone:001-034-C07, full insert sequence.
GenBankAK0674570.0AK067457.1 Oryza sativa Japonica Group cDNA clone:J013106L10, full insert sequence.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_006645126.10.0PREDICTED: scarecrow-like protein 1
SwissprotQ9SDQ30.0SCL1_ARATH; Scarecrow-like protein 1
TrEMBLA0A0D9V8L50.0A0A0D9V8L5_9ORYZ; Uncharacterized protein
STRINGLPERR01G33950.10.0(Leersia perrieri)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MonocotsOGMP51753860
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT1G21450.10.0SCARECROW-like 1
Publications ? help Back to Top
  1. Ding Y, et al.
    Four distinct types of dehydration stress memory genes in Arabidopsis thaliana.
    BMC Plant Biol., 2013. 13: p. 229
    [PMID:24377444]