PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID LPERR01G34250.1
Organism
Leersia perrieri
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Poales; Poaceae; BOP clade; Oryzoideae; Oryzeae; Oryzinae; Leersia
Family ERF
Protein Properties Length: 132aa    MW: 14227 Da    PI: 7.5134
Description ERF family protein
Gene Model
Gene Model ID Type Source Coding Sequence
LPERR01G34250.1genomeOGEView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1AP251.13.4e-16954150
              AP2  1 sgykGVrwdkkrgrWvAeIrdpsengkrkrfslgkfgtaeeAakaaiaar 50
                     ++y+GVr+++ +g+Wv+eIr+p +   r r +lg++ t+e Aa a++ ar
  LPERR01G34250.1  9 CRYRGVRRRR-WGKWVSEIRVPGT---RERLWLGSYATPEAAAVAHDTAR 54
                     78*****777.**********943...5*******************998 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
PfamPF008473.3E-9954IPR001471AP2/ERF domain
Gene3DG3DSA:3.30.730.101.2E-201057IPR001471AP2/ERF domain
PROSITE profilePS5103218.1231068IPR001471AP2/ERF domain
SMARTSM003801.0E-171070IPR001471AP2/ERF domain
SuperFamilySSF541714.71E-151056IPR016177DNA-binding domain
PRINTSPR003676.1E-91122IPR001471AP2/ERF domain
CDDcd000182.31E-121853No hitNo description
PRINTSPR003676.1E-93349IPR001471AP2/ERF domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0006355Biological Processregulation of transcription, DNA-templated
GO:0005634Cellular Componentnucleus
GO:0003677Molecular FunctionDNA binding
GO:0003700Molecular Functiontranscription factor activity, sequence-specific DNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 132 aa     Download sequence    Send to blast
MNGGEEERCR YRGVRRRRWG KWVSEIRVPG TRERLWLGSY ATPEAAAVAH DTARVASDAG  60
MAADAQLVAA REISASPSPT LPAPAAARHD RRDVAPPARH GMYANGAGIG GGEQRLVACA  120
EEISVDDMEI MM
Cis-element ? help Back to Top
SourceLink
PlantRegMapLPERR01G34250.1
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Nucleotide ? help Back to Top
Source Hit ID E-value Description
GenBankHG6703063e-53HG670306.1 Triticum aestivum chromosome 3B, genomic scaffold, cultivar Chinese Spring.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_020195624.12e-32ethylene-responsive transcription factor ERF020-like
TrEMBLA0A0D9V8Q78e-89A0A0D9V8Q7_9ORYZ; Uncharacterized protein
STRINGLPERR01G34250.11e-89(Leersia perrieri)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MonocotsOGMP64332951
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT1G71520.19e-12ERF family protein