PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
Home  TFext  BLAST  Prediction  Download  Help  About  Links  PlantRegMap
(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID LPERR01G34410.1
Organism
Leersia perrieri
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Poales; Poaceae; BOP clade; Oryzoideae; Oryzeae; Oryzinae; Leersia
Family C2H2
Protein Properties Length: 412aa    MW: 43786.3 Da    PI: 5.8734
Description C2H2 family protein
Gene Model
Gene Model ID Type Source Coding Sequence
LPERR01G34410.1genomeOGEView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1zf-C2H214.40.00011143165123
                      EEETTTTEEESSHHHHHHHHHHT CS
          zf-C2H2   1 ykCpdCgksFsrksnLkrHirtH 23 
                      y+C  C+++F ++     H+r+H
  LPERR01G34410.1 143 YPCRLCNRVFASRKAVDGHMRVH 165
                      99*******************99 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
PfamPF138940.0011143165No hitNo description
SuperFamilySSF576671.91E-7143165No hitNo description
PROSITE profilePS5015710.928143170IPR007087Zinc finger, C2H2
SMARTSM003550.0013143165IPR015880Zinc finger, C2H2-like
PROSITE patternPS000280145165IPR007087Zinc finger, C2H2
Gene3DG3DSA:3.30.160.601.2E-4249274IPR013087Zinc finger C2H2-type/integrase DNA-binding domain
PROSITE profilePS501578.621250279IPR007087Zinc finger, C2H2
SMARTSM003550.12250274IPR015880Zinc finger, C2H2-like
PROSITE patternPS000280252274IPR007087Zinc finger, C2H2
SuperFamilySSF576671.91E-7294321No hitNo description
PfamPF139123.3E-8299323IPR007087Zinc finger, C2H2
SMARTSM003550.19299321IPR015880Zinc finger, C2H2-like
PROSITE patternPS000280301321IPR007087Zinc finger, C2H2
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0003676Molecular Functionnucleic acid binding
GO:0046872Molecular Functionmetal ion binding
Sequence ? help Back to Top
Protein Sequence    Length: 412 aa     Download sequence    Send to blast
MEDKPSSSNG SGGLRRRRPY PFLPPPVEEE EIEEGEIRHR GEYYDSGSET EDDDDYVFQP  60
RRDGDDDGRV RPDQYKRRRV GVDDGSSSFS VTRLPSPTPS SESEGTTISD HGEEEEEIAG  120
AGAVVAAAPA KPQQQQQRVA FAYPCRLCNR VFASRKAVDG HMRVHQDHSS SPAHLAGGNG  180
KRSRAITPVA FAPNTTEELA AGDNESTALV IAAPPQPNAI AIAGGGGHHC SASPRSYGEG  240
SGGGHRGPPY RCSYKGCNQA YKTHQGLGGH MAGHINKEKA AAAAAGGGNG GGKAEGKKHR  300
CKVCEAEFLT GVALGGHMRK HYEGKIVNKK KQGEEEENVV GLDLTLTLAL PGQVTAAPTI  360
PPPAEPKEDE VVQDETETET APMVEPELVP VPAPAPANGR RILRIFGVDI EC
Nucleic Localization Signal ? help Back to Top
NLS
No. Start End Sequence
17579KRRRV
Cis-element ? help Back to Top
SourceLink
PlantRegMapLPERR01G34410.1
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
TrEMBLA0A0D9V8S60.0A0A0D9V8S6_9ORYZ; Uncharacterized protein
STRINGLPERR01G34410.10.0(Leersia perrieri)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MonocotsOGMP139281224
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT2G28710.13e-09C2H2 family protein