PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID LPERR01G35370.1
Organism
Leersia perrieri
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Poales; Poaceae; BOP clade; Oryzoideae; Oryzeae; Oryzinae; Leersia
Family GRAS
Protein Properties Length: 520aa    MW: 56291.7 Da    PI: 6.5564
Description GRAS family protein
Gene Model
Gene Model ID Type Source Coding Sequence
LPERR01G35370.1genomeOGEView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1GRAS355.48.6e-1091475201374
             GRAS   1 lvelLlecAeavssgdlelaqalLarlselaspdgdpmqRlaayfteALaarlar.svselykal.ppsetseknsseelaalklfsevsPilk 92 
                      lv+lL++cAeav+ +d ++a +lL +l+  a  +g+++qR+a++f+++La rla  + ++l  a  +    s+++ + +  al l +e++P+l+
  LPERR01G35370.1 147 LVQLLVACAEAVACRDRAQAASLLRELHAGAPVHGTAFQRVASCFVQGLADRLALaHPPSLGPASiSLCLPSPSSCVARGEALALAYELCPYLR 240
                      689**************************************************9944444443322555666778999999************* PP

             GRAS  93 fshltaNqaIleavegeervHiiDfdis....qGlQWpaLlqaLasRpegpp.slRiTgvgspesgskeeleetgerLakfAeelgvpfefnvl 181
                      f+h++aN  Ilea+ege+ vH++D++++     G QW aLl+aLa+R+ g+p ++R+Tgvg+    + ++++++g+ L ++A+++g+++efn  
  LPERR01G35370.1 241 FAHFVANACILEAFEGESSVHVVDLGMTlgleRGHQWRALLDALATRATGKPsRVRLTGVGA----RPDAMRSIGRDLVSYADAIGIRLEFNS- 329
                      ************************98762222678*************666659********....9**************************. PP

             GRAS 182 vakrledleleeLrvkpgEalaVnlvlqlhrlldesvsleserdevLklvkslsPkvvvvveqeadhnsesFlerflealeyysalfdsleakl 275
                      + ++le+l+ +++++ +gEa+a+n+vl+lh++++es    +   +vL+++++lsPk +v+veq+a hn++ Fl rf+eal+yy+alfd+l+a l
  LPERR01G35370.1 330 IDRTLESLDANDIDTTSGEAIAINSVLELHSVVKESRGALN---SVLQTIRKLSPKAFVLVEQDAGHNGPFFLGRFMEALHYYAALFDALDAAL 420
                      799******************************88877777...8************************************************* PP

             GRAS 276 preseerikvErellgreivnvvacegaerrerhetlekWrerleeaGFkpvplsekaakqaklllrkvk.sdgyrveeesgslvlgWkdrpLv 368
                      pr +  r+ vE++ lg ei+nvv cega+r+erhe++ +Wr+r+++aGF++vp++  a +   l  +  + + gy+v ee+g+++lgWk++p++
  LPERR01G35370.1 421 PRYDARRARVEQFHLGAEIRNVVGCEGAARVERHERADQWRRRMSRAGFQSVPIKMAARAREWLDANAGGvGGGYTVAEEKGCVMLGWKGKPVI 514
                      ******************************************************98777665555555556678******************** PP

             GRAS 369 svSaWr 374
                      ++S+W+
  LPERR01G35370.1 515 AASCWK 520
                      *****8 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
PROSITE profilePS5098559.973121499IPR005202Transcription factor GRAS
PfamPF035143.0E-106147520IPR005202Transcription factor GRAS
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0006355Biological Processregulation of transcription, DNA-templated
Sequence ? help Back to Top
Protein Sequence    Length: 520 aa     Download sequence    Send to blast
MSPAPCWTGS PNSITHCTKS QQQIDHLTLT TQQQDASVCT NQEVDYYRYY DLDEAAAFDC  60
DEAELVSRVT KATRVDHFSS PSWPTPPPPP PAATAETSRA RKQSFRDVVE SCKQKVEAME  120
AMETPSPAFQ ECDGGDHGGG GADGMRLVQL LVACAEAVAC RDRAQAASLL RELHAGAPVH  180
GTAFQRVASC FVQGLADRLA LAHPPSLGPA SISLCLPSPS SCVARGEALA LAYELCPYLR  240
FAHFVANACI LEAFEGESSV HVVDLGMTLG LERGHQWRAL LDALATRATG KPSRVRLTGV  300
GARPDAMRSI GRDLVSYADA IGIRLEFNSI DRTLESLDAN DIDTTSGEAI AINSVLELHS  360
VVKESRGALN SVLQTIRKLS PKAFVLVEQD AGHNGPFFLG RFMEALHYYA ALFDALDAAL  420
PRYDARRARV EQFHLGAEIR NVVGCEGAAR VERHERADQW RRRMSRAGFQ SVPIKMAARA  480
REWLDANAGG VGGGYTVAEE KGCVMLGWKG KPVIAASCWK
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
5b3h_A4e-5815451925377Protein SCARECROW
5b3h_D4e-5815451925377Protein SCARECROW
Search in ModeBase
Cis-element ? help Back to Top
SourceLink
PlantRegMapLPERR01G35370.1
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_015646199.10.0DELLA protein RGL1
TrEMBLA0A0D9V9570.0A0A0D9V957_9ORYZ; Uncharacterized protein
STRINGLPERR01G35370.10.0(Leersia perrieri)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MonocotsOGMP56403354
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT5G17490.17e-64RGA-like protein 3