PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID LPERR01G36170.1
Organism
Leersia perrieri
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Poales; Poaceae; BOP clade; Oryzoideae; Oryzeae; Oryzinae; Leersia
Family bHLH
Protein Properties Length: 473aa    MW: 49944.8 Da    PI: 6.6456
Description bHLH family protein
Gene Model
Gene Model ID Type Source Coding Sequence
LPERR01G36170.1genomeOGEView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1HLH29.31.6e-09279326455
                      HHHHHHHHHHHHHHHHHHHHHCTSCCC...TTS-STCHHHHHHHHHHHHHHH CS
              HLH   4 ahnerErrRRdriNsafeeLrellPkaskapskKlsKaeiLekAveYIksLq 55 
                      +h+ +Er RR++i +++  L++l+P +    +k + Ka +L + ++Y++sLq
  LPERR01G36170.1 279 SHSLAERVRREKISQRMKLLQDLVPGC----NKVVGKAVMLDEIINYVQSLQ 326
                      8*************************9....677*****************9 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
CDDcd000833.16E-10273330No hitNo description
SuperFamilySSF474591.31E-16273344IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
PROSITE profilePS5088815.256275325IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
Gene3DG3DSA:4.10.280.101.1E-16277343IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
PfamPF000101.4E-6279326IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
SMARTSM003531.3E-10281331IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0046983Molecular Functionprotein dimerization activity
Sequence ? help Back to Top
Protein Sequence    Length: 473 aa     Download sequence    Send to blast
MNCGPPDQLP PATAPSCFLN LNWDQSMDPA LSSMVSSPAS NSTAAPPDGL ALHGISPQQP  60
HYGGGTPLSS PPKLNLSMMG QFHPYPPPPP GAGGLPILEN PMPMGHLDQF LADPGFAERA  120
ARLSGFDARG GGGGYGGAAV QPQFGLPDAS PAGGSKEMEL GNTRDESSVS GPAPGGGEIP  180
LKGASDGNAR KRKASGKGKS KDSPMSTSAS KEDSSGKRCK STEERENNAA GEENSGKGKV  240
AQSNSENGKK GGKESSSKPP EPPKDYIHVR ARRGEATDSH SLAERVRREK ISQRMKLLQD  300
LVPGCNKVVG KAVMLDEIIN YVQSLQRQVE FLSMKLATVN PQLDFNNLPN LLAKDMHQSC  360
SPLQSSHFPL ETSGAPLPYI NQPQQGNPLG CGLTNGMDNQ GSMHPLDQAF CRQMGSHHPF  420
LNGVSDAASQ VGAFWQDDLQ SVVQMDMGQS QEIATSSNSY NGSLQTVHMK MEL
Binding Motif ? help Back to Top
Motif ID Method Source Motif file
MP00660PBMTransfer from Pp3c6_9520Download
Motif logo
Cis-element ? help Back to Top
SourceLink
PlantRegMapLPERR01G36170.1
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Nucleotide ? help Back to Top
Source Hit ID E-value Description
GenBankAK1010630.0AK101063.1 Oryza sativa Japonica Group cDNA clone:J033022O19, full insert sequence.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_015621927.10.0transcription factor bHLH77 isoform X2
TrEMBLA0A0D9V9H20.0A0A0D9V9H2_9ORYZ; Uncharacterized protein
STRINGLPERR01G36170.20.0(Leersia perrieri)
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT3G07340.14e-62bHLH family protein