PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID LPERR01G36330.1
Organism
Leersia perrieri
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Poales; Poaceae; BOP clade; Oryzoideae; Oryzeae; Oryzinae; Leersia
Family C3H
Protein Properties Length: 437aa    MW: 47671 Da    PI: 8.6611
Description C3H family protein
Gene Model
Gene Model ID Type Source Coding Sequence
LPERR01G36330.1genomeOGEView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1zf-CCCH31.62.7e-1075100126
                      --S---SGGGGTS--TTTTT-SS-SS CS
          zf-CCCH   1 yktelCrffartGtCkyGdrCkFaHg 26 
                      ++++ C +++rtG C++G +C+F+H+
  LPERR01G36330.1  75 PGEPDCTYYLRTGLCRFGMSCRFNHP 100
                      5789*********************8 PP
2zf-CCCH391.4e-12121146227
                      -S---SGGGGTS--TTTTT-SS-SSS CS
          zf-CCCH   2 ktelCrffartGtCkyGdrCkFaHgp 27 
                      ++++C+++++tGtCk+G++CkF+H++
  LPERR01G36330.1 121 GQPECQYYLKTGTCKFGPTCKFHHPR 146
                      5799********************96 PP
3zf-CCCH36.58.1e-12168192327
                      S---SGGGGTS--TTTTT-SS-SSS CS
          zf-CCCH   3 telCrffartGtCkyGdrCkFaHgp 27 
                      +++C+++ +tG+CkyG++CkF+H++
  LPERR01G36330.1 168 EKECSYYIKTGQCKYGNTCKFHHPE 192
                      679********************96 PP
4zf-CCCH39.31.1e-12329354227
                      -S---SGGGGTS--TTTTT-SS-SSS CS
          zf-CCCH   2 ktelCrffartGtCkyGdrCkFaHgp 27 
                      ++++C+++++tG Ck+G+ CkF+H++
  LPERR01G36330.1 329 DQPECQYYMKTGDCKFGAVCKFHHPR 354
                      689*********************96 PP
5zf-CCCH41.42.4e-13378402226
                      -S---SGGGGTS--TTTTT-SS-SS CS
          zf-CCCH   2 ktelCrffartGtCkyGdrCkFaHg 26 
                      ++elC+f++r+G+Ck+G++CkF H+
  LPERR01G36330.1 378 GEELCKFYSRYGICKFGANCKFDHP 402
                      78**********************9 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
PROSITE profilePS5010314.5474102IPR000571Zinc finger, CCCH-type
SMARTSM003561.1E-474101IPR000571Zinc finger, CCCH-type
PfamPF006429.1E-876100IPR000571Zinc finger, CCCH-type
SuperFamilySSF902293.01E-579102IPR000571Zinc finger, CCCH-type
Gene3DG3DSA:4.10.1000.105.3E-480100IPR000571Zinc finger, CCCH-type
PROSITE profilePS5010315.986119147IPR000571Zinc finger, CCCH-type
SMARTSM003562.0E-5119146IPR000571Zinc finger, CCCH-type
PfamPF006424.9E-10121146IPR000571Zinc finger, CCCH-type
SuperFamilySSF902291.44E-6122148IPR000571Zinc finger, CCCH-type
Gene3DG3DSA:4.10.1000.104.8E-5125147IPR000571Zinc finger, CCCH-type
SuperFamilySSF902292.09E-6165192IPR000571Zinc finger, CCCH-type
PROSITE profilePS5010314.671165193IPR000571Zinc finger, CCCH-type
SMARTSM003565.5E-5165192IPR000571Zinc finger, CCCH-type
PfamPF006421.9E-8168192IPR000571Zinc finger, CCCH-type
Gene3DG3DSA:4.10.1000.104.6E-5171191IPR000571Zinc finger, CCCH-type
PROSITE profilePS5010314.023327355IPR000571Zinc finger, CCCH-type
SMARTSM003565.9E-5327354IPR000571Zinc finger, CCCH-type
PfamPF006422.8E-9329354IPR000571Zinc finger, CCCH-type
SuperFamilySSF902293.14E-5330354IPR000571Zinc finger, CCCH-type
Gene3DG3DSA:4.10.1000.103.1E-4333353IPR000571Zinc finger, CCCH-type
PROSITE profilePS5010315.094376404IPR000571Zinc finger, CCCH-type
SuperFamilySSF902294.19E-6376402IPR000571Zinc finger, CCCH-type
SMARTSM003566.8E-6376403IPR000571Zinc finger, CCCH-type
PfamPF006421.4E-10378402IPR000571Zinc finger, CCCH-type
Gene3DG3DSA:4.10.1000.104.2E-5380401IPR000571Zinc finger, CCCH-type
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0046872Molecular Functionmetal ion binding
Sequence ? help Back to Top
Protein Sequence    Length: 437 aa     Download sequence    Send to blast
MDDAAPAVVT VTASAAAPPP PPPPPPPPPP SQLPATAATD APSPDPAALY GEGMWQQMAM  60
GGSGTTQPGP YPERPGEPDC TYYLRTGLCR FGMSCRFNHP SDRNLAIASA RMKGEYPERM  120
GQPECQYYLK TGTCKFGPTC KFHHPREKAG IAGRVQLNTL GYPLRPNEKE CSYYIKTGQC  180
KYGNTCKFHH PELFNAMASS RGSPIYPSVH SSATAGPPSY TGTMASWAFP RGSYIQSPRW  240
QNPSNYAPMI VPQGLVQVSS WNSYPGQMLP VSSSESRLQS PGAQQTYGTS QQVDASASNQ  300
GMLSPYRSSS YPVPQYALQR ENVFPERPDQ PECQYYMKTG DCKFGAVCKF HHPRVRSMPP  360
PDCLLSPVGL PLRPIFQGEE LCKFYSRYGI CKFGANCKFD HPTVAPPMGV YAYGSTSANV  420
PMVRRLLQSP SPSAYTS
Cis-element ? help Back to Top
SourceLink
PlantRegMapLPERR01G36330.1
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Nucleotide ? help Back to Top
Source Hit ID E-value Description
GenBankAK0989480.0AK098948.1 Oryza sativa Japonica Group cDNA clone:J013050D10, full insert sequence.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_015622340.10.0zinc finger CCCH domain-containing protein 12
SwissprotQ5JLB50.0C3H12_ORYSJ; Zinc finger CCCH domain-containing protein 12
TrEMBLA0A0D9V9J30.0A0A0D9V9J3_9ORYZ; Uncharacterized protein
STRINGLPERR01G36330.10.0(Leersia perrieri)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MonocotsOGMP115338132
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT3G02830.11e-146zinc finger protein 1
Publications ? help Back to Top
  1. Kikuchi S, et al.
    Collection, mapping, and annotation of over 28,000 cDNA clones from japonica rice.
    Science, 2003. 301(5631): p. 376-9
    [PMID:12869764]
  2. Deng H,Liu H,Li X,Xiao J,Wang S
    A CCCH-type zinc finger nucleic acid-binding protein quantitatively confers resistance against rice bacterial blight disease.
    Plant Physiol., 2012. 158(2): p. 876-89
    [PMID:22158700]