PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
Home  TFext  BLAST  Prediction  Download  Help  About  Links  PlantRegMap
(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID LPERR01G36730.1
Organism
Leersia perrieri
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Poales; Poaceae; BOP clade; Oryzoideae; Oryzeae; Oryzinae; Leersia
Family M-type_MADS
Protein Properties Length: 166aa    MW: 18188.5 Da    PI: 11.1174
Description M-type_MADS family protein
Gene Model
Gene Model ID Type Source Coding Sequence
LPERR01G36730.1genomeOGEView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1SRF-TF80.79.5e-2656105251
                      ---SHHHHHHHHHHHHHHHHHHHHHHHHHHT-EEEEEEE-TTSEEEEEE- CS
           SRF-TF   2 rienksnrqvtfskRrngilKKAeELSvLCdaevaviifsstgklyeyss 51 
                      rie+k  rqv fskRr+g++KKA+EL  LCdaeva+++fs+ gklyeyss
  LPERR01G36730.1  56 RIEDKASRQVRFSKRRAGLFKKAFELALLCDAEVALLVFSPAGKLYEYSS 105
                      8***********************************************96 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
PROSITE profilePS5006628.59547107IPR002100Transcription factor, MADS-box
SMARTSM004329.3E-3347106IPR002100Transcription factor, MADS-box
CDDcd002651.78E-3248106No hitNo description
SuperFamilySSF554554.06E-2649118IPR002100Transcription factor, MADS-box
PRINTSPR004046.8E-274969IPR002100Transcription factor, MADS-box
PfamPF003194.0E-2556103IPR002100Transcription factor, MADS-box
PRINTSPR004046.8E-276984IPR002100Transcription factor, MADS-box
PRINTSPR004046.8E-2784105IPR002100Transcription factor, MADS-box
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0006355Biological Processregulation of transcription, DNA-templated
GO:0005634Cellular Componentnucleus
GO:0003677Molecular FunctionDNA binding
GO:0046983Molecular Functionprotein dimerization activity
Sequence ? help Back to Top
Protein Sequence    Length: 166 aa     Download sequence    Send to blast
MGGPHPPAHS PPPPFPPNTT PHTRIHRRER ERARGARVAA AAGDWMARRG RVQLRRIEDK  60
ASRQVRFSKR RAGLFKKAFE LALLCDAEVA LLVFSPAGKL YEYSSSRSLQ NNADESDANQ  120
LEKLEKLLTN ALRDTKSKKM LAKQTGEGSG SGANSSGSRG QEEGNA
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
3kov_A7e-1849106259Myocyte-specific enhancer factor 2A
3kov_B7e-1849106259Myocyte-specific enhancer factor 2A
3kov_I7e-1849106259Myocyte-specific enhancer factor 2A
3kov_J7e-1849106259Myocyte-specific enhancer factor 2A
3p57_A7e-1849106259Myocyte-specific enhancer factor 2A
3p57_B7e-1849106259Myocyte-specific enhancer factor 2A
3p57_C7e-1849106259Myocyte-specific enhancer factor 2A
3p57_D7e-1849106259Myocyte-specific enhancer factor 2A
3p57_I7e-1849106259Myocyte-specific enhancer factor 2A
3p57_J7e-1849106259Myocyte-specific enhancer factor 2A
5f28_A8e-1849106360MEF2C
5f28_B8e-1849106360MEF2C
5f28_C8e-1849106360MEF2C
5f28_D8e-1849106360MEF2C
Search in ModeBase
Functional Description ? help Back to Top
Source Description
UniProtProbable transcription factor involved in the regulation of flowering time under short day (SD) conditions. Functions as promoter of flowering under SD conditions, upstream of EHD1, HD3A and MADS14, but downstream of GIGANTEA (GI). May transmit a SD promotion signal from GI to EHD1. Functions independently of MADS50 to control flowering time. {ECO:0000269|PubMed:17951465}.
Cis-element ? help Back to Top
SourceLink
PlantRegMapLPERR01G36730.1
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Nucleotide ? help Back to Top
Source Hit ID E-value Description
GenBankAP0129186e-77AP012918.1 Oryza sativa Indica Group DNA, chromosome 1, BAC clone: K0158A04, cultivar: Kasalath, complete sequence.
GenBankCP0126096e-77CP012609.1 Oryza sativa Indica Group cultivar RP Bio-226 chromosome 1 sequence.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_025878223.15e-59MADS-box transcription factor 51
SwissprotQ9XJ614e-67MAD51_ORYSJ; MADS-box transcription factor 51
TrEMBLA0A0D9V9N91e-117A0A0D9V9N9_9ORYZ; Uncharacterized protein
STRINGLPERR01G36730.11e-118(Leersia perrieri)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MonocotsOGMP12938398
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT4G11880.14e-24AGAMOUS-like 14
Publications ? help Back to Top
  1. Kikuchi S, et al.
    Collection, mapping, and annotation of over 28,000 cDNA clones from japonica rice.
    Science, 2003. 301(5631): p. 376-9
    [PMID:12869764]
  2. Kim SL,Lee S,Kim HJ,Nam HG,An G
    OsMADS51 is a short-day flowering promoter that functions upstream of Ehd1, OsMADS14, and Hd3a.
    Plant Physiol., 2007. 145(4): p. 1484-94
    [PMID:17951465]