PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID LPERR01G36990.1
Organism
Leersia perrieri
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Poales; Poaceae; BOP clade; Oryzoideae; Oryzeae; Oryzinae; Leersia
Family NAC
Protein Properties Length: 222aa    MW: 23249.1 Da    PI: 9.2778
Description NAC family protein
Gene Model
Gene Model ID Type Source Coding Sequence
LPERR01G36990.1genomeOGEView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1NAM88.61.1e-27201521128
              NAM   1 lppGfrFhPtdeelvveyLkkkvegkkleleevikevdiykvePwdLpkkvkaeekewyfFskrdkkya.tgkrknra....tksgyWkatgkd 89 
                      lp GfrF+Ptdeel+ +yL++kv + +l++ +vi+ +d+ +++P+dL      +e e yfF++ +++   +g    ra       g+W+a+gk+
  LPERR01G36990.1  20 LPIGFRFRPTDEELLLHYLRRKVLSFPLPA-DVIPVADLARLHPSDLL-LPGDGEGERYFFHRPATSCWrKGGGGGRAggggGGGGVWRASGKE 111
                      699***************************.99**************6.334566699***99988876357777777333345899******* PP

              NAM  90 kevlsk..kgel......vglkktLvfykgrapkgektdWvmheyrl 128
                      k v++   +         vg k+tLvf+     + ++t+W mhe+rl
  LPERR01G36990.1 112 KLVVAGnkG--GaaaavaVGAKRTLVFF----LRHRRTEWAMHEFRL 152
                      ***996551..1455666**********....34457********97 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
SuperFamilySSF1019419.02E-3817177IPR003441NAC domain
PROSITE profilePS5100537.94320177IPR003441NAC domain
PfamPF023652.0E-1921152IPR003441NAC domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0006355Biological Processregulation of transcription, DNA-templated
GO:0005634Cellular Componentnucleus
GO:0003677Molecular FunctionDNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 222 aa     Download sequence    Send to blast
MATSPALTAA GGGGGGYRTL PIGFRFRPTD EELLLHYLRR KVLSFPLPAD VIPVADLARL  60
HPSDLLLPGD GEGERYFFHR PATSCWRKGG GGGRAGGGGG GGGVWRASGK EKLVVAGNKG  120
GAAAAVAVGA KRTLVFFLRH RRTEWAMHEF RLLPAGAGAD QTPAAAKEWV VCRIFRRSPP  180
RVRRRDDDDV SVAPSSPSSC VTDGGGDGEE GEEESSGGDG SN
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
1ut4_A1e-201917816166NO APICAL MERISTEM PROTEIN
1ut4_B1e-201917816166NO APICAL MERISTEM PROTEIN
1ut7_A1e-201917816166NO APICAL MERISTEM PROTEIN
1ut7_B1e-201917816166NO APICAL MERISTEM PROTEIN
4dul_A1e-201917816166NAC domain-containing protein 19
4dul_B1e-201917816166NAC domain-containing protein 19
Search in ModeBase
Nucleic Localization Signal ? help Back to Top
NLS
No. Start End Sequence
19199GGRAGGGGG
Cis-element ? help Back to Top
SourceLink
PlantRegMapLPERR01G36990.1
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_020184279.14e-64NAC domain-containing protein 83-like
TrEMBLA0A0D9V9R81e-155A0A0D9V9R8_9ORYZ; Uncharacterized protein
STRINGLPERR01G36990.11e-156(Leersia perrieri)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MonocotsOGMP82333047
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT2G33480.17e-23NAC domain containing protein 41