PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID LPERR01G38080.1
Organism
Leersia perrieri
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Poales; Poaceae; BOP clade; Oryzoideae; Oryzeae; Oryzinae; Leersia
Family NAC
Protein Properties Length: 196aa    MW: 21788.6 Da    PI: 8.3785
Description NAC family protein
Gene Model
Gene Model ID Type Source Coding Sequence
LPERR01G38080.1genomeOGEView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1NAM68.81.5e-21161446128
              NAM   6 rFhPtdeelvveyLkkkvegkkleleevikevdiykvePwdLpkkvkaeekewyfFskrdkkyatgkrknr.atksgyWk..atgkdkevlskk 96 
                       F+Pt++el+ ++L+++++g + +++ ++ e+d + + PwdL  +++++++e yfFs+r++++++++  +r ++  g W   +t + ++v + +
  LPERR01G38080.1  16 AFDPTEDELMLHFLRPQLRGFSPRVAGAVVEADPCAAAPWDLL-ALHGRRDEGYFFSPRARASRRKQSVRRtIAGGGAWMhsSTKNGQSVSELG 108
                      6************************999**************6.677778899******************6677999*833444556666668 PP

              NAM  97 gelvglkktLvfy....kgrapkgektdWvmheyrl 128
                        + +++  + fy    +g +   ++t W+m ey++
  LPERR01G38080.1 109 VVVRWCRVNFCFYvfggSGGEAGRVSTGWMMAEYEI 144
                      8889*********988756666668*********86 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
PROSITE profilePS5100524.9811170IPR003441NAC domain
PfamPF023653.4E-1316144IPR003441NAC domain
SuperFamilySSF1019415.36E-3116170IPR003441NAC domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0006355Biological Processregulation of transcription, DNA-templated
GO:0005634Cellular Componentnucleus
GO:0003677Molecular FunctionDNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 196 aa     Download sequence    Send to blast
MGEELNLIIR EDDCAAFDPT EDELMLHFLR PQLRGFSPRV AGAVVEADPC AAAPWDLLAL  60
HGRRDEGYFF SPRARASRRK QSVRRTIAGG GAWMHSSTKN GQSVSELGVV VRWCRVNFCF  120
YVFGGSGGEA GRVSTGWMMA EYEITDPRCY RRADDGEEDE FWVLCHVRKS SRSPAVRDST  180
SAAAPAKSRR RKAAVA
Cis-element ? help Back to Top
SourceLink
PlantRegMapLPERR01G38080.1
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_015641921.11e-88NAC domain-containing protein 48-like isoform X1
RefseqXP_015641928.11e-88NAC domain-containing protein 48-like isoform X2
TrEMBLA0A0D9VA601e-141A0A0D9VA60_9ORYZ; Uncharacterized protein
STRINGLPERR01G38080.11e-142(Leersia perrieri)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MonocotsOGMP137612528
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT3G04070.28e-14NAC domain containing protein 47