PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

PlantRegMap/PlantTFDB v5.0

Plant Transcription Factor Database

Transcription Factor Information

Basic Information | Signature Domain | Sequence |

Basic Information? help Back to Top

TF ID

LPERR01G38620.1

Organism

Leersia perrieri

Taxonomic ID

77586

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Poales; Poaceae; BOP clade; Oryzoideae; Oryzeae; Oryzinae; Leersia

Family

SRS

Protein Properties

Length: 240aa MW: 24476.5 Da PI: 8.0165

Description

SRS family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
LPERR01G38620.1	genome	OGE	View CDS

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	DUF702	226	7.1e-70	12	176	3	154
DUF702 3 sgtasCqdCGnqakkdCaheRCRtCCksrgfdCathvkstWvpaakrrerqqqlaaasskaaasa.....aeaaskrkrelkskkqsalsstkl 91 +g+a+CqdCGnqakkdC h+RCRtCCksrgfdC+thvkstWvpaa+rrerqq + + s +++ a a+aask++r ++q+++s+t++ LPERR01G38620.1 12 AGAATCQDCGNQAKKDCGHQRCRTCCKSRGFDCSTHVKSTWVPAARRRERQQIAGSGGSASSSPAtasaaAAAASKKPRL--LTSQTTTSHTST 103 6889********************************************998865433333222233335555566665..5999999* PP DUF702 92 ssaeskkeletss..........lPeevsseavfrcvrvssvddgeeelaYqtavsigGhvfkGiLydqGlee 154 s+a+++++++t+s lP++v+++avfrcvrv+s+ddge+e+aYq++vsi+GhvfkG+LydqG+++ LPERR01G38620.1 104 SNATTPRSFDTTSshqdasfrenLPRQVRAPAVFRCVRVTSIDDGEDEYAYQATVSINGHVFKGFLYDQGVDD 176 ******99999*****************************************************986 PP

Protein Features ? help Back to Top

Database	Entry ID	E-value	Start	End	InterPro ID	Description
Pfam	PF05142	1.6E-64	14	175	IPR007818	Protein of unknown function DUF702
TIGRFAMs	TIGR01623	3.4E-27	16	58	IPR006510	Zinc finger, lateral root primordium type 1
TIGRFAMs	TIGR01624	4.6E-29	127	174	IPR006511	Lateral Root Primordium type 1, C-terminal

Gene Ontology ? help Back to Top
GO Term	GO Category	GO Description
GO:0009733	Biological Process	response to auxin
GO:0048364	Biological Process	root development
GO:0042803	Molecular Function	protein homodimerization activity

Sequence ? help Back to Top
Protein Sequence Length: 240 aa Download sequence Send to blast
MLDTGGGGSS GAGAATCQDC GNQAKKDCGH QRCRTCCKSR GFDCSTHVKS TWVPAARRRE 60 RQQIAGSGGS ASSSPATASA AAAAASKKPR LLTSQTTTSH TSTSNATTPR SFDTTSSHQD 120 ASFRENLPRQ VRAPAVFRCV RVTSIDDGED EYAYQATVSI NGHVFKGFLY DQGVDDGRLA 180 AATSNDDSTT GVPNISELHL GGGNASMVHS DLYGGGSGSG GGGGGGTHIL GGSSYGNTMN

Nucleic Localization Signal ? help Back to Top

No.	Start	End	Sequence
1	216	226	SGSGGGGGGGT

Functional Description ? help Back to Top
Source	Description
UniProt	Transcription activator that binds DNA on 5'-ACTCTAC-3' and promotes auxin homeostasis-regulating gene expression (e.g. YUC genes), as well as genes affecting stamen development, cell expansion and timing of flowering. Synergistically with other SHI-related proteins, regulates gynoecium, stamen and leaf development in a dose-dependent manner, controlling apical-basal patterning. Promotes style and stigma formation, and influence vascular development during gynoecium development. May also have a role in the formation and/or maintenance of the shoot apical meristem (SAM). Modulates root growth. {ECO:0000269\|PubMed:16740146, ECO:0000269\|PubMed:18835563}.

Cis-element ? help Back to Top
Source	Link
PlantRegMap	LPERR01G38620.1

Regulation -- Description ? help Back to Top
Source	Description
UniProt	INDUCTION: Expression repressed by LDL1 via histone H3 and H4 deacetylation. {ECO:0000269\|PubMed:18835563}.

Regulation -- PlantRegMap ? help Back to Top
Source	Upstream Regulator	Target Gene
PlantRegMap	Retrieve	-

Annotation -- Nucleotide ? help Back to Top
Source	Hit ID	E-value	Description
GenBank	AK102444	1e-173	AK102444.1 Oryza sativa Japonica Group cDNA clone:J033093N15, full insert sequence.

Annotation -- Protein ? help Back to Top
Source	Hit ID	E-value	Description
Refseq	XP_015622050.1	1e-114	protein LATERAL ROOT PRIMORDIUM 1
Swissprot	Q94CK9	1e-65	LRP1_ARATH; Protein LATERAL ROOT PRIMORDIUM 1
TrEMBL	A0A0D9VAD2	1e-174	A0A0D9VAD2_9ORYZ; Uncharacterized protein
STRING	LPERR01G38620.1	1e-175	(Leersia perrieri)

Orthologous Group ? help Back to Top
Lineage	Orthologous Group ID	Taxa Number	Gene Number
Monocots	OGMP3579	36	79

Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID	E-value	Description
AT5G12330.2	6e-59	Lateral root primordium (LRP) protein-related

Publications ? help Back to Top
Estornell LH,Landberg K,Cierlik I,Sundberg E SHI/STY Genes Affect Pre- and Post-meiotic Anther Processes in Auxin Sensing Domains in Arabidopsis. Front Plant Sci, 2018. 9: p. 150 [PMID:29491878]