PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID LPERR02G02050.1
Organism
Leersia perrieri
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Poales; Poaceae; BOP clade; Oryzoideae; Oryzeae; Oryzinae; Leersia
Family bZIP
Protein Properties Length: 216aa    MW: 23048.2 Da    PI: 6.6828
Description bZIP family protein
Gene Model
Gene Model ID Type Source Coding Sequence
LPERR02G02050.1genomeOGEView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1bZIP_136.79e-12155182128
                      XXXXCHHHCHHHHHHHHHHHHHHHHHHH CS
           bZIP_1   1 ekelkrerrkqkNReAArrsRqRKkaei 28 
                      e+e+k+++rkq+NRe+ArrsR+RK++++
  LPERR02G02050.1 155 EREIKKQKRKQSNRESARRSRLRKQEKL 182
                      89***********************986 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
PfamPF077779.4E-18170IPR012900G-box binding protein, multifunctional mosaic region
PfamPF165962.1E-1079137No hitNo description
Gene3DG3DSA:1.20.5.1702.8E-7153196No hitNo description
SMARTSM003380.0032155215IPR004827Basic-leucine zipper domain
PfamPF001703.7E-9155181IPR004827Basic-leucine zipper domain
SuperFamilySSF579598.89E-6158197No hitNo description
CDDcd147025.79E-13160198No hitNo description
PROSITE patternPS000360162177IPR004827Basic-leucine zipper domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0006355Biological Processregulation of transcription, DNA-templated
GO:0003700Molecular Functiontranscription factor activity, sequence-specific DNA binding
GO:0043565Molecular Functionsequence-specific DNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 216 aa     Download sequence    Send to blast
MGTNDPGTPS KATKASEPEQ SPATTSGTTA PVYPEWPGFQ AYSAMPPHGF FPPPVAASPQ  60
AHPYMWGAQD SHSKENDVKE DGSSQNGMSH SASQGVLNQN MSMAPTQTGV VIGGVAPATN  120
LNIGMDYWGA TGSSPVPAMH GKAPSGSVRG EQWDEREIKK QKRKQSNRES ARRSRLRKQE  180
KLGGNSDSIP DMNKQNDTNG NCQKQQDSDA QPDDAP
Nucleic Localization Signal ? help Back to Top
NLS
No. Start End Sequence
1171177RRSRLRK
2171178RRSRLRKQ
Functional Description ? help Back to Top
Source Description
UniProtBinds to the hexamer motif 5'-ACGTCA-3' of histone gene promoters.
Cis-element ? help Back to Top
SourceLink
PlantRegMapLPERR02G02050.1
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Nucleotide ? help Back to Top
Source Hit ID E-value Description
GenBankAK1119011e-117AK111901.1 Oryza sativa Japonica Group cDNA clone:J023076M20, full insert sequence.
GenBankAK1120091e-117AK112009.1 Oryza sativa Japonica Group cDNA clone:006-209-B12, full insert sequence.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_015626323.12e-77transcription factor HBP-1a
RefseqXP_015626324.12e-77transcription factor HBP-1a
SwissprotP239221e-55HBP1A_WHEAT; Transcription factor HBP-1a
TrEMBLA0A0D9VBQ31e-157A0A0D9VBQ3_9ORYZ; Uncharacterized protein
STRINGLPERR02G02050.11e-158(Leersia perrieri)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MonocotsOGMP21473796
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT2G35530.12e-20basic region/leucine zipper transcription factor 16
Publications ? help Back to Top
  1. Tabata T,Nakayama T,Mikami K,Iwabuchi M
    HBP-1a and HBP-1b: leucine zipper-type transcription factors of wheat.
    EMBO J., 1991. 10(6): p. 1459-67
    [PMID:2026143]
  2. Tabata T, et al.
    A protein that binds to a cis-acting element of wheat histone genes has a leucine zipper motif.
    Science, 1989. 245(4921): p. 965-7
    [PMID:2772648]
  3. Mikami K, et al.
    Developmental and tissue-specific regulation of the gene for the wheat basic/leucine zipper protein HBP-1a(17) in transgenic Arabidopsis plants.
    Mol. Gen. Genet., 1995. 248(5): p. 573-82
    [PMID:7476857]
  4. Nakayama T,Okanami M,Meshi T,Iwabuchi M
    Dissection of the wheat transcription factor HBP-1a(17) reveals a modular structure for the activation domain.
    Mol. Gen. Genet., 1997. 253(5): p. 553-61
    [PMID:9065688]
  5. Okanami M,Meshi T,Tamai H,Iwabuchi M
    HALF-1, a bZIP-type protein, interacting with the wheat transcription factor HBP-1a contains a novel transcriptional activation domain.
    Genes Cells, 1996. 1(1): p. 87-99
    [PMID:9078369]