PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID LPERR02G02980.1
Organism
Leersia perrieri
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Poales; Poaceae; BOP clade; Oryzoideae; Oryzeae; Oryzinae; Leersia
Family SBP
Protein Properties Length: 475aa    MW: 50865.6 Da    PI: 9.1747
Description SBP family protein
Gene Model
Gene Model ID Type Source Coding Sequence
LPERR02G02980.1genomeOGEView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1SBP131.62.8e-41185261278
                      -SSTT-----TT--HHHHHTT--HHHHT-S-EEETTEEEEE-TTTSSEEETTT--SS--S-STTTT-------S--- CS
              SBP   2 CqvegCeadlseakeyhrrhkvCevhskapvvlvsgleqrfCqqCsrfhelsefDeekrsCrrrLakhnerrrkkqa 78 
                      CqvegC++dls+ak yhr+h+vCe hsk+p+v+v+gle+rfCqqCsrfh l+efD++k+sCrrrL++hn+rrrk+q+
  LPERR02G02980.1 185 CQVEGCNVDLSSAKPYHRKHRVCEPHSKTPKVIVAGLERRFCQQCSRFHGLNEFDQKKKSCRRRLNDHNARRRKPQP 261
                      **************************************************************************997 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
Gene3DG3DSA:4.10.1100.101.1E-32177246IPR004333Transcription factor, SBP-box
PROSITE profilePS5114131.761182259IPR004333Transcription factor, SBP-box
SuperFamilySSF1036123.01E-39183264IPR004333Transcription factor, SBP-box
PfamPF031101.7E-31185258IPR004333Transcription factor, SBP-box
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0048510Biological Processregulation of timing of transition from vegetative to reproductive phase
GO:0048653Biological Processanther development
GO:0005634Cellular Componentnucleus
GO:0044212Molecular Functiontranscription regulatory region DNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 475 aa     Download sequence    Send to blast
MGSFGMDWNQ KSSVLWDWEN MLPVGNNTNE NPKNVMQAES KLAGVGVDIG HESAHSSGGT  60
FSSSSEIGYG SSKSSISVSI DSPSKVGNTI ELNFASVKEP GRNMGKGKEL CKVDDTGTSR  120
SPVVAASQAE PLIGLKLGKR TYFEDVCGGQ NVKGSPSSGV SVATPSPGQA KKAKVAQQNA  180
SNTYCQVEGC NVDLSSAKPY HRKHRVCEPH SKTPKVIVAG LERRFCQQCS RFHGLNEFDQ  240
KKKSCRRRLN DHNARRRKPQ PEAISLSSSR LSTILYGDAR QQTGLLFGQA PYGQMGSYAS  300
SLWDNPAPGG FKFTATKAPW SKPTRAAGVD GTRVSNHQAS SNVLPHEPHH SFDSLMAFKE  360
TNAKVLNQGM EASAVASSSA GGPDFERALS PLSINSVGAA NLQPGSQMHP GVTAIAGTSN  420
PAMMPSPAIW QGNLSLDQQA QFQAFDRLSN DDTAAPHQLQ LPKPSYDNSH YDQMN
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
1ul4_A3e-281852581184squamosa promoter binding protein-like 4
Search in ModeBase
Nucleic Localization Signal ? help Back to Top
NLS
No. Start End Sequence
1240257KKKSCRRRLNDHNARRRK
Functional Description ? help Back to Top
Source Description
UniProtTrans-acting factor that binds specifically to the consensus nucleotide sequence 5'-TNCGTACAA-3' (By similarity). May be involved in panicle development. {ECO:0000250}.
UniProtTrans-acting factor that binds specifically to the consensus nucleotide sequence 5'-TNCGTACAA-3' (By similarity). May be involved in panicle development. {ECO:0000250}.
Cis-element ? help Back to Top
SourceLink
PlantRegMapLPERR02G02980.1
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Nucleotide ? help Back to Top
Source Hit ID E-value Description
GenBankAK2429840.0AK242984.1 Oryza sativa Japonica Group cDNA, clone: J090094N03, full insert sequence.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_006646870.10.0PREDICTED: squamosa promoter-binding-like protein 3
SwissprotA2X0Q60.0SPL3_ORYSI; Squamosa promoter-binding-like protein 3
SwissprotA3A2Z80.0SPL3_ORYSJ; Squamosa promoter-binding-like protein 3
TrEMBLA0A0D9VC290.0A0A0D9VC29_9ORYZ; Uncharacterized protein
STRINGLPERR02G02980.10.0(Leersia perrieri)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MonocotsOGMP36973776
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT5G43270.32e-40squamosa promoter binding protein-like 2