PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID LPERR02G03410.1
Organism
Leersia perrieri
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Poales; Poaceae; BOP clade; Oryzoideae; Oryzeae; Oryzinae; Leersia
Family HD-ZIP
Protein Properties Length: 251aa    MW: 26716.4 Da    PI: 8.2325
Description HD-ZIP family protein
Gene Model
Gene Model ID Type Source Coding Sequence
LPERR02G03410.1genomeOGEView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1Homeobox598e-19135189256
                      T--SS--HHHHHHHHHHHHHSSS--HHHHHHHHHHCTS-HHHHHHHHHHHHHHHH CS
         Homeobox   2 rkRttftkeqleeLeelFeknrypsaeereeLAkklgLterqVkvWFqNrRakek 56 
                      rk+ ++++eq + Lee F  ++ +s++++ eLA klgL+ rqV vWFqNrRa+ k
  LPERR02G03410.1 135 RKKLRLSREQATLLEESFSAHNILSHAQKHELAGKLGLSARQVEVWFQNRRARTK 189
                      788899***********************************************98 PP
2HD-ZIP_I/II114.56.6e-37135223189
      HD-ZIP_I/II   1 ekkrrlskeqvklLEesFeeeekLeperKvelareLglqprqvavWFqnrRARtktkqlEkdyeaLkraydalkeenerLekeveeLre 89 
                      +kk+rls+eq++lLEesF++++ L++ +K+ela +Lgl++rqv+vWFqnrRARtk+kq+E d+e L+r++++l++en+rL+++ ++Lr+
  LPERR02G03410.1 135 RKKLRLSREQATLLEESFSAHNILSHAQKHELAGKLGLSARQVEVWFQNRRARTKLKQTEADCEILRRWCERLADENARLRHDLADLRS 223
                      69***********************************************************************************9985 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
PROSITE profilePS5007117.232131191IPR001356Homeobox domain
SMARTSM003894.4E-14133195IPR001356Homeobox domain
SuperFamilySSF466895.43E-18134200IPR009057Homeodomain-like
Gene3DG3DSA:1.10.10.604.9E-18135196IPR009057Homeodomain-like
CDDcd000863.50E-13135192No hitNo description
PfamPF000463.6E-16135189IPR001356Homeobox domain
PRINTSPR000313.0E-6162171IPR000047Helix-turn-helix motif
PROSITE patternPS000270166189IPR017970Homeobox, conserved site
PRINTSPR000313.0E-6171187IPR000047Helix-turn-helix motif
SMARTSM003401.7E-11191234IPR003106Leucine zipper, homeobox-associated
PfamPF021836.2E-7191223IPR003106Leucine zipper, homeobox-associated
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0006355Biological Processregulation of transcription, DNA-templated
GO:0005634Cellular Componentnucleus
GO:0003700Molecular Functiontranscription factor activity, sequence-specific DNA binding
GO:0043565Molecular Functionsequence-specific DNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 251 aa     Download sequence    Send to blast
MTSSSSLTTT TTSSNMEADS AVEFSDTRLS LAIGCSPSAP PPPPAAEQRR AVVLFGELFP  60
APPRESSSPA TAAAGGHTIS VGKRDQRGET AATTRNNSSS KKARTAVRGG GGDDDDGVDR  120
WSPSGGGGDD EGANRKKLRL SREQATLLEE SFSAHNILSH AQKHELAGKL GLSARQVEVW  180
FQNRRARTKL KQTEADCEIL RRWCERLADE NARLRHDLAD LRSSSFYSSL SAAAVCSSCA  240
GAAAGEDTRR Q
Nucleic Localization Signal ? help Back to Top
NLS
No. Start End Sequence
1183191RRARTKLKQ
Functional Description ? help Back to Top
Source Description
UniProtProbable transcription factor. {ECO:0000250}.
Cis-element ? help Back to Top
SourceLink
PlantRegMapLPERR02G03410.1
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_015624893.12e-66putative homeobox-leucine zipper protein HOX26
SwissprotQ67UX62e-67HOX26_ORYSJ; Putative homeobox-leucine zipper protein HOX26
TrEMBLA0A0D9VC950.0A0A0D9VC95_9ORYZ; Uncharacterized protein
STRINGLPERR02G03410.10.0(Leersia perrieri)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MonocotsOGMP83153249
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT3G60390.14e-34homeobox-leucine zipper protein 3