PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID LPERR02G03850.1
Organism
Leersia perrieri
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Poales; Poaceae; BOP clade; Oryzoideae; Oryzeae; Oryzinae; Leersia
Family ERF
Protein Properties Length: 200aa    MW: 20435.8 Da    PI: 5.7996
Description ERF family protein
Gene Model
Gene Model ID Type Source Coding Sequence
LPERR02G03850.1genomeOGEView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1AP2591.1e-182171256
              AP2  2 gykGVrwdkkrgrWvAeIrdpsengkrkrfslgkfgtaeeAakaaiaarkklege 56
                     +y+GVr+++ +gr++AeIrdp    k++ ++lg+f++ae Aa+a++aa+++l+g+
  LPERR02G03850.1 21 RYRGVRRRP-SGRYAAEIRDPA---KKTPIWLGTFDSAEAAARAYDAAARSLRGA 71
                     69*******.7*********83...36*************************995 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
CDDcd000181.53E-142177No hitNo description
Gene3DG3DSA:3.30.730.102.9E-292178IPR001471AP2/ERF domain
SuperFamilySSF541715.36E-212179IPR016177DNA-binding domain
PfamPF008476.9E-122170IPR001471AP2/ERF domain
PROSITE profilePS5103222.0762178IPR001471AP2/ERF domain
SMARTSM003808.1E-342184IPR001471AP2/ERF domain
PRINTSPR003678.4E-82233IPR001471AP2/ERF domain
PRINTSPR003678.4E-84460IPR001471AP2/ERF domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0006355Biological Processregulation of transcription, DNA-templated
GO:0005634Cellular Componentnucleus
GO:0003677Molecular FunctionDNA binding
GO:0003700Molecular Functiontranscription factor activity, sequence-specific DNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 200 aa     Download sequence    Send to blast
MRRARLPPAP TPAMVGEGEV RYRGVRRRPS GRYAAEIRDP AKKTPIWLGT FDSAEAAARA  60
YDAAARSLRG AAARTNFPPT SPPPPPPQQL PPSAAAAAAA TSSHSSTVES WGATAPALAA  120
VSVRGGGAMG AADEDCRSYC GSSSSVLCED GASGAGDEAA APRCSPLPFD LNLPAPAPAV  180
AAAADADDEM DWRCDTLLHL
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
5wx9_A2e-191578872Ethylene-responsive transcription factor ERF096
Search in ModeBase
Cis-element ? help Back to Top
SourceLink
PlantRegMapLPERR02G03850.1
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Nucleotide ? help Back to Top
Source Hit ID E-value Description
GenBankAK2875597e-80AK287559.1 Oryza sativa Japonica Group cDNA, clone: J065023L05, full insert sequence.
GenBankAP0048437e-80AP004843.2 Oryza sativa Japonica Group genomic DNA, chromosome 2, BAC clone:B1103G11.
GenBankAP0048717e-80AP004871.3 Oryza sativa Japonica Group genomic DNA, chromosome 2, PAC clone:P0419H03.
GenBankAP0149587e-80AP014958.1 Oryza sativa Japonica Group DNA, chromosome 2, cultivar: Nipponbare, complete sequence.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_015623823.12e-68ethylene-responsive transcription factor 3
TrEMBLA0A0D9VCE21e-136A0A0D9VCE2_9ORYZ; Uncharacterized protein
STRINGLPERR02G03850.11e-136(Leersia perrieri)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MonocotsOGMP61022347