PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID LPERR02G03890.1
Organism
Leersia perrieri
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Poales; Poaceae; BOP clade; Oryzoideae; Oryzeae; Oryzinae; Leersia
Family Whirly
Protein Properties Length: 275aa    MW: 30458.8 Da    PI: 11.0643
Description Whirly family protein
Gene Model
Gene Model ID Type Source Coding Sequence
LPERR02G03890.1genomeOGEView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1Whirly1821.1e-56992362139
           Whirly   2 vyktkaalkvkavrptfealdsgnlklkraGglllelanataerkydWekkqsfalsatevaelvdlaskesceffhdpaakgsneGkvrkalk 95 
                      v+k+kaal++++++p+f++l+sg  +++++G++++++ +a+++rkyd++kkq fals+tev++l++l++ esceffhdp++k+s+eG+v+k+l+
  LPERR02G03890.1  99 VFKGKAALSMHPILPSFSKLESGGSRVNKNGSVMMTFFPAVGQRKYDYSKKQLFALSPTEVGSLISLGPAESCEFFHDPSMKSSHEGQVKKSLS 192
                      9********************************************************************************************* PP

           Whirly  96 vePlpdGsGlfvnlsvtnslvkgnesfsvPvskaefavlrsllv 139
                      v Pl + sG+f+n++v n+++k+ e++s+P++kaef+v+r++l+
  LPERR02G03890.1 193 VTPLGNDSGYFLNITVLNNVQKTTERLSLPITKAEFTVMRTALS 236
                      *****************************************985 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
Gene3DG3DSA:2.30.31.107.0E-7286254IPR009044ssDNA-binding transcriptional regulator
SuperFamilySSF544472.9E-7390275IPR009044ssDNA-binding transcriptional regulator
PfamPF085362.4E-5799233IPR013742Plant transcription factor
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0006281Biological ProcessDNA repair
GO:0006355Biological Processregulation of transcription, DNA-templated
GO:0005739Cellular Componentmitochondrion
GO:0003677Molecular FunctionDNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 275 aa     Download sequence    Send to blast
MRRLSRHKRR VSWCSLSPSS LPFHSLAALA TQRNASARSG GRKAKAMMQR LSRFAPSSSR  60
RVTDLKDALW SGSLTFQHAL STFAPDENTS GRKFASYTVF KGKAALSMHP ILPSFSKLES  120
GGSRVNKNGS VMMTFFPAVG QRKYDYSKKQ LFALSPTEVG SLISLGPAES CEFFHDPSMK  180
SSHEGQVKKS LSVTPLGNDS GYFLNITVLN NVQKTTERLS LPITKAEFTV MRTALSFALP  240
HILGWDQALT VDHPRPSSAS KPRVERPHPD SEWER
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
4kop_A3e-72902478165Single-stranded DNA-binding protein WHY2, mitochondrial
4kop_B3e-72902478165Single-stranded DNA-binding protein WHY2, mitochondrial
4kop_C3e-72902478165Single-stranded DNA-binding protein WHY2, mitochondrial
4kop_D3e-72902478165Single-stranded DNA-binding protein WHY2, mitochondrial
Search in ModeBase
Functional Description ? help Back to Top
Source Description
UniProtSingle-stranded DNA-binding protein that may be involved in the maintenance of mitochondrial genome stability by preventing break-induced DNA rearrangements. {ECO:0000269|PubMed:21911368}.
Cis-element ? help Back to Top
SourceLink
PlantRegMapLPERR02G03890.1
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Nucleotide ? help Back to Top
Source Hit ID E-value Description
GenBankAK0615690.0AK061569.1 Oryza sativa Japonica Group cDNA clone:006-311-F08, full insert sequence.
GenBankAK0994790.0AK099479.1 Oryza sativa Japonica Group cDNA clone:J013025B22, full insert sequence.
GenBankAK1047680.0AK104768.1 Oryza sativa Japonica Group cDNA clone:001-039-A03, full insert sequence.
GenBankCT8285100.0CT828510.1 Oryza sativa (indica cultivar-group) cDNA clone:OSIGCRA129J03, full insert sequence.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_015627387.11e-159single-stranded DNA-binding protein WHY2, mitochondrial
SwissprotD9J0346e-73WHY2_SOLTU; Single-stranded DNA-binding protein WHY2, mitochondrial
TrEMBLA0A0D9VCE70.0A0A0D9VCE7_9ORYZ; Uncharacterized protein
STRINGLPERR02G03890.10.0(Leersia perrieri)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MonocotsOGMP30123885
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT1G71260.11e-73WHIRLY 2