PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID LPERR02G04100.1
Organism
Leersia perrieri
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Poales; Poaceae; BOP clade; Oryzoideae; Oryzeae; Oryzinae; Leersia
Family C3H
Protein Properties Length: 492aa    MW: 56206.6 Da    PI: 9.7728
Description C3H family protein
Gene Model
Gene Model ID Type Source Coding Sequence
LPERR02G04100.1genomeOGEView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1zf-CCCH24.16.4e-087295126
                     --S---SGGGGTS--TTTTT-SS-SS CS
          zf-CCCH  1 yktelCrffartGtCkyGdrCkFaHg 26
                     ykt+lC  ++r G C++ d+C+FaHg
  LPERR02G04100.1 72 YKTKLCALWQR-GNCSR-DTCSFAHG 95
                     9**********.*****.*******9 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
Gene3DG3DSA:4.10.1000.106.6E-1266101IPR000571Zinc finger, CCCH-type
SuperFamilySSF902293.34E-570100IPR000571Zinc finger, CCCH-type
SMARTSM003560.00747196IPR000571Zinc finger, CCCH-type
PROSITE profilePS5010312.7377197IPR000571Zinc finger, CCCH-type
PfamPF006421.0E-57295IPR000571Zinc finger, CCCH-type
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0046872Molecular Functionmetal ion binding
Sequence ? help Back to Top
Protein Sequence    Length: 492 aa     Download sequence    Send to blast
MTRKASNPRG ARASDTPTPP PQTRTLVLRV AILQTLTLAL AGDRNSPIRE RGIHRRSSAA  60
EMLGPPRRGP AYKTKLCALW QRGNCSRDTC SFAHGTNELR RATASRNAFP HHPGRRDYRG  120
DDFRGRIDRR FSPRRRHSPG RESRGHRPLF DRRPTSRERE SSYSRSPSRK SERRHEKKTD  180
DVETNSSRSL SLSDDNDDKK KDKFSSGDEK QDHEKQLKQI RLDMEALRDD KTHLEVILDE  240
KIDEVRHISS KVNDLEAQLR TEKEECHRMT SKMKKFIKAH ARFLKAQEEV KRSQARFERL  300
GDLLAVDILK RPTNEEGSSV NVDEDLNGSY ERSPNVAATK KRSIPRSTSE DAKPVKKRRE  360
RDSDTITKSD KYRSDGTDFD KTSKGTEATK SLYLKKKLWE DEKSKLGANL FTDKAKDSPV  420
NHVLPSTGMA AHAIDDLNEA LELEDIHEPI DALLENDADD KIRSSVIPLQ PLPVAQNAYE  480
QYEGDDEEVD VE
Nucleic Localization Signal ? help Back to Top
NLS
No. Start End Sequence
1339358KKRSIPRSTSEDAKPVKKRR
Cis-element ? help Back to Top
SourceLink
PlantRegMapLPERR02G04100.1
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Nucleotide ? help Back to Top
Source Hit ID E-value Description
GenBankAK0651980.0AK065198.1 Oryza sativa Japonica Group cDNA clone:J013002E19, full insert sequence.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_015624712.10.0zinc finger CCCH domain-containing protein 13 isoform X3
SwissprotQ6H7U20.0C3H13_ORYSJ; Zinc finger CCCH domain-containing protein 13
TrEMBLA0A0D9VCH10.0A0A0D9VCH1_9ORYZ; Uncharacterized protein
STRINGLPERR02G04100.10.0(Leersia perrieri)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MonocotsOGMP38822943
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT3G21810.11e-21C3H family protein
Publications ? help Back to Top
  1. Kikuchi S, et al.
    Collection, mapping, and annotation of over 28,000 cDNA clones from japonica rice.
    Science, 2003. 301(5631): p. 376-9
    [PMID:12869764]