PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID LPERR02G05080.1
Organism
Leersia perrieri
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Poales; Poaceae; BOP clade; Oryzoideae; Oryzeae; Oryzinae; Leersia
Family SBP
Protein Properties Length: 427aa    MW: 45109.2 Da    PI: 6.9799
Description SBP family protein
Gene Model
Gene Model ID Type Source Coding Sequence
LPERR02G05080.1genomeOGEView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1SBP128.82e-40210286177
                      --SSTT-----TT--HHHHHTT--HHHHT-S-EEETTEEEEE-TTTSSEEETTT--SS--S-STTTT-------S-- CS
              SBP   1 lCqvegCeadlseakeyhrrhkvCevhskapvvlvsgleqrfCqqCsrfhelsefDeekrsCrrrLakhnerrrkkq 77 
                      +Cq+egC+adls ak+yhrrhkvC+ h+ka++v++sg++qrfCqqCsrfh l efDe+krsCr+rL +hn+rrrk++
  LPERR02G05080.1 210 RCQAEGCKADLSAAKHYHRRHKVCDYHAKAAAVVASGKQQRFCQQCSRFHVLAEFDEAKRSCRKRLTEHNRRRRKPT 286
                      6**************************************************************************85 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
Gene3DG3DSA:4.10.1100.105.8E-34204272IPR004333Transcription factor, SBP-box
PROSITE profilePS5114132.206208285IPR004333Transcription factor, SBP-box
SuperFamilySSF1036122.09E-37209286IPR004333Transcription factor, SBP-box
PfamPF031101.8E-30211284IPR004333Transcription factor, SBP-box
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0005634Cellular Componentnucleus
GO:0003677Molecular FunctionDNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 427 aa     Download sequence    Send to blast
MMSSRLNSGV ISPSSAADAA LDFGYSPMPP PPYLGFDLPA TAVDRTPLFQ HSLYDGGLDF  60
SSSSSPATPF PPQFHDAAAL GLSGNATTAA AGNLLHTPSP SLHMPMMNLP GFPPAMAATA  120
DSMYQFGAGI ATGGGGIVKR EDFLDIGGGG GGGGGRIGLN LGRRTYFSPA DVLAVDRLLL  180
RSRLGGMGPM GVLGLGLAAA AAAHHHQPPR CQAEGCKADL SAAKHYHRRH KVCDYHAKAA  240
AVVASGKQQR FCQQCSRFHV LAEFDEAKRS CRKRLTEHNR RRRKPTGGRR PAASTTTASG  300
VSCQLQDQLA DNGGHLSPAV APPPTLSLAA LPPQAQEEED DDDEDGGLGT VLMMQHQQRL  360
RDGGDGDGDD DDDTHHHLMT SMKSFARQQH RHSSGSSNDN NNNIPSCSSA SGQHNNNNMN  420
FFEVDFI
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
1ul4_A8e-292112841184squamosa promoter binding protein-like 4
Search in ModeBase
Nucleic Localization Signal ? help Back to Top
NLS
No. Start End Sequence
1267284KRSCRKRLTEHNRRRRKP
Functional Description ? help Back to Top
Source Description
UniProtTrans-acting factor that binds specifically to the consensus nucleotide sequence 5'-TNCGTACAA-3'. {ECO:0000250}.
Cis-element ? help Back to Top
SourceLink
PlantRegMapLPERR02G05080.1
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Nucleotide ? help Back to Top
Source Hit ID E-value Description
GenBankAJ0116146e-82AJ011614.1 Zea mays mRNA for SBP-domain protein 1.
GenBankEU9668916e-82EU966891.1 Zea mays clone 297975 SBP-domain protein 1 mRNA, complete cds.
GenBankKJ7280096e-82KJ728009.1 Zea mays clone pUT6144 SBP transcription factor (SBP10) mRNA, partial cds.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_025878835.11e-100squamosa promoter-binding-like protein 5 isoform X1
SwissprotQ0E3F81e-101SPL5_ORYSJ; Squamosa promoter-binding-like protein 5
TrEMBLA0A0D9VCV60.0A0A0D9VCV6_9ORYZ; Uncharacterized protein
STRINGLPERR02G05080.10.0(Leersia perrieri)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MonocotsOGMP23753593
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT1G02065.16e-35squamosa promoter binding protein-like 8