PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID LPERR02G05470.1
Organism
Leersia perrieri
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Poales; Poaceae; BOP clade; Oryzoideae; Oryzeae; Oryzinae; Leersia
Family C2H2
Protein Properties Length: 184aa    MW: 19279.5 Da    PI: 7.1452
Description C2H2 family protein
Gene Model
Gene Model ID Type Source Coding Sequence
LPERR02G05470.1genomeOGEView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1zf-C2H213.60.000284106123
                      EEETTTTEEESSHHHHHHHHHHT CS
          zf-C2H2   1 ykCpdCgksFsrksnLkrHirtH 23 
                      + C++C + F ++  L  H++ H
  LPERR02G05470.1  84 FACHYCRREFYSSQALGGHQNAH 106
                      78******************988 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
SuperFamilySSF576673.09E-682112No hitNo description
PROSITE profilePS5015711.11584111IPR007087Zinc finger, C2H2
PROSITE patternPS00028086106IPR007087Zinc finger, C2H2
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0046872Molecular Functionmetal ion binding
Sequence ? help Back to Top
Protein Sequence    Length: 184 aa     Download sequence    Send to blast
MEGLSNSAGG VRRDVTFVAA AGDRMAAAAA ALRLVELDLI GTFGAASATP PAPPRLIIVS  60
PPPPAKEEGD DGDGDGDGEP RQLFACHYCR REFYSSQALG GHQNAHKRER TLARRHAAAA  120
GDEHASPASF AIHGAGAFVS ASQPAWTAAS RVLDGERLLN YGGKVDWPRG GGDQKRQIDL  180
TLKL
Cis-element ? help Back to Top
SourceLink
PlantRegMapLPERR02G05470.1
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_015624955.12e-53zinc finger protein 1
TrEMBLA0A0D9VD061e-130A0A0D9VD06_9ORYZ; Uncharacterized protein
STRINGLPERR02G05470.11e-130(Leersia perrieri)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MonocotsOGMP18336274
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT5G10970.11e-15C2H2 family protein