PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID LPERR02G05510.1
Organism
Leersia perrieri
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Poales; Poaceae; BOP clade; Oryzoideae; Oryzeae; Oryzinae; Leersia
Family TALE
Protein Properties Length: 313aa    MW: 34104.5 Da    PI: 6.5872
Description TALE family protein
Gene Model
Gene Model ID Type Source Coding Sequence
LPERR02G05510.1genomeOGEView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1Homeobox22.81.6e-072522852154
                      HSSS--HHHHHHHHHHCTS-HHHHHHHHHHHHHH CS
         Homeobox  21 knrypsaeereeLAkklgLterqVkvWFqNrRak 54 
                      k +yp+++++++L +++gL+ +q+ +WF N+R +
  LPERR02G05510.1 252 KWPYPTEDDKARLVQETGLQLKQINNWFINQRKR 285
                      469*****************************87 PP
2ELK26.81.2e-09206227122
              ELK   1 ELKhqLlrKYsgyLgsLkqEFs 22 
                      ELK++L+++Y+++L+++++E++
  LPERR02G05510.1 206 ELKNELKQGYKEKLVDIREEIL 227
                      9*******************97 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
SMARTSM012551.2E-184185IPR005540KNOX1
PfamPF037901.8E-154481IPR005540KNOX1
SMARTSM012566.2E-2695150IPR005541KNOX2
PfamPF037914.7E-16103149IPR005541KNOX2
PROSITE profilePS5121310.057206226IPR005539ELK domain
PfamPF037891.9E-6206227IPR005539ELK domain
SMARTSM011880.0023206227IPR005539ELK domain
PROSITE profilePS5007111.353226289IPR001356Homeobox domain
SMARTSM003892.3E-10228293IPR001356Homeobox domain
SuperFamilySSF466898.98E-16228291IPR009057Homeodomain-like
CDDcd000861.18E-11229290No hitNo description
Gene3DG3DSA:1.10.10.601.0E-24233290IPR009057Homeodomain-like
PfamPF059208.7E-18246285IPR008422Homeobox KN domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0006355Biological Processregulation of transcription, DNA-templated
GO:0005634Cellular Componentnucleus
GO:0003677Molecular FunctionDNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 313 aa     Download sequence    Send to blast
MAFHYPDHGL AMDPSSAAAA AAAAAAAASS PNPSFSPGGG EREKAAVAAH PLYERLLEAH  60
VACLRVATPV DQLPRIDAQI AARPPPLAAA SAAAAAGGPS GGEELDLFMT HYVLLLCSFK  120
EQLQQHVRVH AMEAVMGCWE LEQSLQSLTG ASPGEGTGAT MSDDEDNQVD SEANMYDGND  180
GSDGMGFGPL MLTEGERSLV ERVRHELKNE LKQGYKEKLV DIREEILRKR RAGKLPGDTA  240
SILKAWWQAH SKWPYPTEDD KARLVQETGL QLKQINNWFI NQRKRNWHSN PASSGEKTKK  300
KRYHITKLCL TIS
Nucleic Localization Signal ? help Back to Top
NLS
No. Start End Sequence
1282301RKRNWHSNPASSGEKTKKKR
Cis-element ? help Back to Top
SourceLink
PlantRegMapLPERR02G05510.1
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Nucleotide ? help Back to Top
Source Hit ID E-value Description
GenBankAK2433520.0AK243352.1 Oryza sativa Japonica Group cDNA, clone: J100060L07, full insert sequence.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_015626238.10.0homeobox protein knotted-1-like 2 isoform X2
SwissprotQ0E3C30.0KNOS2_ORYSJ; Homeobox protein knotted-1-like 2
TrEMBLA0A0D9VD110.0A0A0D9VD11_9ORYZ; Uncharacterized protein
STRINGLPERR02G05510.10.0(Leersia perrieri)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MonocotsOGMP56438169
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT5G25220.21e-142KNOTTED1-like homeobox gene 3