PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID LPERR02G06040.1
Organism
Leersia perrieri
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Poales; Poaceae; BOP clade; Oryzoideae; Oryzeae; Oryzinae; Leersia
Family bZIP
Protein Properties Length: 136aa    MW: 15291.1 Da    PI: 7.8482
Description bZIP family protein
Gene Model
Gene Model ID Type Source Coding Sequence
LPERR02G06040.1genomeOGEView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1bZIP_139.21.5e-124086551
                     CHHHCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH CS
           bZIP_1  5 krerrkqkNReAArrsRqRKkaeieeLeekvkeLeaeNkaLkkelee 51
                     ++ rr+ +NRe+ArrsR RK+ +++eL   v eL   N++L  el++
  LPERR02G06040.1 40 RKKRRLVSNRESARRSRVRKQRRLDELSSQVSELRDTNQRLLVELNH 86
                     78899************************************988876 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
SMARTSM003381.4E-936100IPR004827Basic-leucine zipper domain
PROSITE profilePS5021711.11638101IPR004827Basic-leucine zipper domain
SuperFamilySSF579597.63E-114091No hitNo description
Gene3DG3DSA:1.20.5.1707.2E-1140114No hitNo description
PfamPF001701.4E-94086IPR004827Basic-leucine zipper domain
PROSITE patternPS0003604358IPR004827Basic-leucine zipper domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0006355Biological Processregulation of transcription, DNA-templated
GO:0003700Molecular Functiontranscription factor activity, sequence-specific DNA binding
GO:0043565Molecular Functionsequence-specific DNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 136 aa     Download sequence    Send to blast
MTDPYYGYSG GGGGSSITIS PVLAGEENDQ AMMRHGNDER KKRRLVSNRE SARRSRVRKQ  60
RRLDELSSQV SELRDTNQRL LVELNHMITK HARIVKENSQ LREEASHLQK KLSETVVMEL  120
EEAEVAAAAA GTLEEA
Nucleic Localization Signal ? help Back to Top
NLS
No. Start End Sequence
15258RRSRVRK
25259RRSRVRKQ
Cis-element ? help Back to Top
SourceLink
PlantRegMapLPERR02G06040.1
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Nucleotide ? help Back to Top
Source Hit ID E-value Description
GenBankAP0057852e-94AP005785.3 Oryza sativa Japonica Group genomic DNA, chromosome 2, PAC clone:P0453H10.
GenBankAP0149582e-94AP014958.1 Oryza sativa Japonica Group DNA, chromosome 2, cultivar: Nipponbare, complete sequence.
GenBankBT1293472e-94BT129347.1 Oryza sativa clone RRlibA00066 mRNA sequence.
GenBankBT1293892e-94BT129389.1 Oryza sativa clone RRlibA00076 mRNA sequence.
GenBankCP0126102e-94CP012610.1 Oryza sativa Indica Group cultivar RP Bio-226 chromosome 2 sequence.
GenBankCT8353622e-94CT835362.1 Oryza sativa (indica cultivar-group) cDNA clone:OSIGCPI022L05, full insert sequence.
GenBankCT8353652e-94CT835365.1 Oryza sativa (indica cultivar-group) cDNA clone:OSIGCPI025K13, full insert sequence.
GenBankCU4069132e-94CU406913.1 Oryza rufipogon (W1943) cDNA clone: ORW1943C002J11, full insert sequence.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_015624742.13e-46basic leucine zipper 43
TrEMBLA0A0D9VD777e-93A0A0D9VD77_9ORYZ; Uncharacterized protein
STRINGLPERR02G06040.11e-93(Leersia perrieri)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MonocotsOGMP127422735
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT3G30530.13e-09basic leucine-zipper 42