PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID LPERR02G06230.1
Organism
Leersia perrieri
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Poales; Poaceae; BOP clade; Oryzoideae; Oryzeae; Oryzinae; Leersia
Family C3H
Protein Properties Length: 212aa    MW: 21603.3 Da    PI: 10.0958
Description C3H family protein
Gene Model
Gene Model ID Type Source Coding Sequence
LPERR02G06230.1genomeOGEView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1zf-CCCH35.41.8e-11178203127
                      --S---SGGGGTS--TTTTT-SS-SSS CS
          zf-CCCH   1 yktelCrffartGtCkyGdrCkFaHgp 27 
                      +kt+lC +f + G C +GdrC+FaHg+
  LPERR02G06230.1 178 FKTKLCENFTK-GSCTFGDRCHFAHGE 203
                      69*********.*************96 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
PROSITE profilePS5010312.3334169IPR000571Zinc finger, CCCH-type
SMARTSM003561.34168IPR000571Zinc finger, CCCH-type
SuperFamilySSF902294.06E-64268IPR000571Zinc finger, CCCH-type
Gene3DG3DSA:4.10.1000.105.3E-74367IPR000571Zinc finger, CCCH-type
Gene3DG3DSA:3.30.1370.108.2E-5108150IPR004088K Homology domain, type 1
CDDcd001050.00379108146No hitNo description
Gene3DG3DSA:4.10.1000.101.0E-16175208IPR000571Zinc finger, CCCH-type
SuperFamilySSF902292.62E-9177207IPR000571Zinc finger, CCCH-type
SMARTSM003566.2E-8177203IPR000571Zinc finger, CCCH-type
PROSITE profilePS5010317.009177204IPR000571Zinc finger, CCCH-type
PfamPF006423.5E-9178203IPR000571Zinc finger, CCCH-type
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0003723Molecular FunctionRNA binding
GO:0046872Molecular Functionmetal ion binding
Sequence ? help Back to Top
Protein Sequence    Length: 212 aa     Download sequence    Send to blast
MEGGGGGAGA GRKRGKPDGG TNGAAGGKRA RESESFQTGV GSKSKPCTKF FSTSGCPFGE  60
GCHFLHHFPG GYQAVAKMTN LGGPALAPPP VRMPMGAAVP DGPPTPTISR VTGAKLAIRD  120
HESDANLKNI ELEGTFDQIK NASAMVRELI VSIGGGAPPQ GKKPAGGSHR GGGPGSNFKT  180
KLCENFTKGS CTFGDRCHFA HGENELRKSA AA
Binding Motif ? help Back to Top
Motif ID Method Source Motif file
MP00113ampDAPTransfer from AT3G12130Download
Motif logo
Cis-element ? help Back to Top
SourceLink
PlantRegMapLPERR02G06230.1
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieveRetrieve
Annotation -- Nucleotide ? help Back to Top
Source Hit ID E-value Description
GenBankAK2423411e-132AK242341.1 Oryza sativa Japonica Group cDNA, clone: J075199P17, full insert sequence.
GenBankAP0003661e-132AP000366.2 Oryza sativa Japonica Group genomic DNA, chromosome 2, PAC clone:P0437H03.
GenBankAP0149581e-132AP014958.1 Oryza sativa Japonica Group DNA, chromosome 2, cultivar: Nipponbare, complete sequence.
GenBankCP0126101e-132CP012610.1 Oryza sativa Indica Group cultivar RP Bio-226 chromosome 2 sequence.
GenBankCT8353831e-132CT835383.1 Oryza sativa (indica cultivar-group) cDNA clone:OSIGCRA106D07, full insert sequence.
GenBankCT8353841e-132CT835384.1 Oryza sativa (indica cultivar-group) cDNA clone:OSIGCRA106E07, full insert sequence.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_010520038.19e-73PREDICTED: zinc finger CCCH domain-containing protein 36-like isoform X1
SwissprotQ9C7C34e-65C3H36_ARATH; Zinc finger CCCH domain-containing protein 36
TrEMBLA0A0D9VDA11e-150A0A0D9VDA1_9ORYZ; Uncharacterized protein
STRINGXP_010520038.14e-72(Tarenaya hassleriana)
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT3G12130.11e-59C3H family protein
Publications ? help Back to Top
  1. Yan Z,Jia J,Yan X,Shi H,Han Y
    Arabidopsis KHZ1 and KHZ2, two novel non-tandem CCCH zinc-finger and K-homolog domain proteins, have redundant roles in the regulation of flowering and senescence.
    Plant Mol. Biol., 2017. 95(6): p. 549-565
    [PMID:29076025]