PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID LPERR02G06230.2
Organism
Leersia perrieri
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Poales; Poaceae; BOP clade; Oryzoideae; Oryzeae; Oryzinae; Leersia
Family C3H
Protein Properties Length: 308aa    MW: 31607.9 Da    PI: 10.1391
Description C3H family protein
Gene Model
Gene Model ID Type Source Coding Sequence
LPERR02G06230.2genomeOGEView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1zf-CCCH24.16.5e-08109134227
                      -S---SGGGGTS--TTTTT-SS-SSS CS
          zf-CCCH   2 ktelCrffartGtCkyGdrCkFaHgp 27 
                      kt+lC+ +     Ck Gd+C+FaHg+
  LPERR02G06230.2 109 KTRLCNKYNTAEGCKWGDKCHFAHGE 134
                      8***********************96 PP
2zf-CCCH34.72.9e-11274299127
                      --S---SGGGGTS--TTTTT-SS-SSS CS
          zf-CCCH   1 yktelCrffartGtCkyGdrCkFaHgp 27 
                      +kt+lC +f + G C +GdrC+FaHg+
  LPERR02G06230.2 274 FKTKLCENFTK-GSCTFGDRCHFAHGE 299
                      69*********.*************96 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
SMARTSM003561.34168IPR000571Zinc finger, CCCH-type
PROSITE profilePS5010312.3334169IPR000571Zinc finger, CCCH-type
SuperFamilySSF902297.06E-64268IPR000571Zinc finger, CCCH-type
Gene3DG3DSA:4.10.1000.101.2E-64367IPR000571Zinc finger, CCCH-type
Gene3DG3DSA:4.10.1000.102.7E-14104139IPR000571Zinc finger, CCCH-type
SuperFamilySSF902292.09E-8106138IPR000571Zinc finger, CCCH-type
PROSITE profilePS5010313.075107135IPR000571Zinc finger, CCCH-type
SMARTSM003560.069107134IPR000571Zinc finger, CCCH-type
PfamPF006425.3E-5109134IPR000571Zinc finger, CCCH-type
SuperFamilySSF547911.25E-14168248IPR004088K Homology domain, type 1
SMARTSM003226.7E-10177247IPR004087K Homology domain
Gene3DG3DSA:3.30.1370.105.8E-15178246IPR004088K Homology domain, type 1
PROSITE profilePS5008414.76178242IPR004088K Homology domain, type 1
CDDcd001052.21E-13180242No hitNo description
PfamPF000133.9E-11180244IPR004088K Homology domain, type 1
Gene3DG3DSA:4.10.1000.101.8E-16271304IPR000571Zinc finger, CCCH-type
SMARTSM003566.2E-8273299IPR000571Zinc finger, CCCH-type
SuperFamilySSF902294.58E-9273303IPR000571Zinc finger, CCCH-type
PROSITE profilePS5010317.009273300IPR000571Zinc finger, CCCH-type
PfamPF006425.9E-9274299IPR000571Zinc finger, CCCH-type
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0003723Molecular FunctionRNA binding
GO:0046872Molecular Functionmetal ion binding
Sequence ? help Back to Top
Protein Sequence    Length: 308 aa     Download sequence    Send to blast
MEGGGGGAGA GRKRGKPDGG TNGAAGGKRA RESESFQTGV GSKSKPCTKF FSTSGCPFGE  60
GCHFLHHFPG GYQAVAKMTN LGGPALAPPP VRMPMGAAVP DGPPTPTVKT RLCNKYNTAE  120
GCKWGDKCHF AHGERELGKP MLMDSSMPPP MGPRPTGHFA PPPMPNPGMS TPASFGASAT  180
AKISVDASLA GAIIGRGGVN TKQISRVTGA KLAIRDHESD ANLKNIELEG TFDQIKNASA  240
MVRELIVSIG GGAPPQGKKP AGGSHRGGGP GSNFKTKLCE NFTKGSCTFG DRCHFAHGEN  300
ELRKSAAA
Binding Motif ? help Back to Top
Motif ID Method Source Motif file
MP00113ampDAPTransfer from AT3G12130Download
Motif logo
Cis-element ? help Back to Top
SourceLink
PlantRegMapLPERR02G06230.2
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieveRetrieve
Annotation -- Nucleotide ? help Back to Top
Source Hit ID E-value Description
GenBankAK2423410.0AK242341.1 Oryza sativa Japonica Group cDNA, clone: J075199P17, full insert sequence.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_015626985.10.0zinc finger CCCH domain-containing protein 14
SwissprotQ7F8R00.0C3H14_ORYSJ; Zinc finger CCCH domain-containing protein 14
TrEMBLA0A0D9VDA20.0A0A0D9VDA2_9ORYZ; Uncharacterized protein
STRINGLPERR02G06230.20.0(Leersia perrieri)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MonocotsOGMP125438127
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT3G12130.13e-73C3H family protein