PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID LPERR02G08270.1
Organism
Leersia perrieri
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Poales; Poaceae; BOP clade; Oryzoideae; Oryzeae; Oryzinae; Leersia
Family bHLH
Protein Properties Length: 182aa    MW: 18962.1 Da    PI: 9.8703
Description bHLH family protein
Gene Model
Gene Model ID Type Source Coding Sequence
LPERR02G08270.1genomeOGEView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1HLH21.35e-071670653
                     HHHHHHHHHHHHHHHHHHHCTSCCC.........TTS-.STCHHHHHHHHHHHHH CS
              HLH  6 nerErrRRdriNsafeeLrellPkas......kapskK.lsKaeiLekAveYIks 53
                     + +Er+RR+++N  +++L +l+ + s       ++++   +  + L +A eYI+ 
  LPERR02G08270.1 16 KTVERNRRNQMNALYSRLDSLVRSGSgsapppPGGGPSaTTRPDRLGEAAEYIRR 70
                     679********************97779999955555569999999999999985 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
PROSITE profilePS508888.5111071IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
Gene3DG3DSA:4.10.280.101.0E-61585IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
SuperFamilySSF474596.4E-71688IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0050832Biological Processdefense response to fungus
GO:0046983Molecular Functionprotein dimerization activity
Sequence ? help Back to Top
Protein Sequence    Length: 182 aa     Download sequence    Send to blast
MDAAGAGGNG GKPDRKTVER NRRNQMNALY SRLDSLVRSG SGSAPPPPGG GPSATTRPDR  60
LGEAAEYIRR TEERVGILRE RKRELTGSAG SSAAEAAEVE VQHLGSGLHA ILVTGAPPPP  120
PGDGGSFHRA VRAVEEAGGE VHNAHFSLVG AKAIYTIHAR VGEGYGGIET VVQRVKEAIR  180
SN
Cis-element ? help Back to Top
SourceLink
PlantRegMapLPERR02G08270.1
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_025798292.12e-71transcription factor bHLH162-like isoform X1
TrEMBLA0A0D9VE221e-125A0A0D9VE22_9ORYZ; Uncharacterized protein
STRINGLPERR02G08270.11e-125(Leersia perrieri)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MonocotsOGMP119872938
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT4G20970.11e-16bHLH family protein