PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID LPERR02G09050.1
Organism
Leersia perrieri
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Poales; Poaceae; BOP clade; Oryzoideae; Oryzeae; Oryzinae; Leersia
Family B3
Protein Properties Length: 433aa    MW: 47735.7 Da    PI: 9.122
Description B3 family protein
Gene Model
Gene Model ID Type Source Coding Sequence
LPERR02G09050.1genomeOGEView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1B353.93.2e-17298386286
                      EEE-..-HHHHTT-EE--HHH.HTT..---..--SEEEEEE.TTS-EEEEEE....EEETTEEEE-TTHHHHHHHHT--TT-EEEEEE-S CS
               B3   2 fkvltpsdvlksgrlvlpkkfaeeh..ggkkeesktltled.esgrsWevkliy..rkksgryvltkGWkeFvkangLkegDfvvFkldg 86 
                      +k+lt+sdv++ gr+v+pk+ ae+h   ++++e+ +l + d +   +W++k+++  ++ks++yvl+    +Fvk++gL++gD+++++ ++
  LPERR02G09050.1 298 CKELTNSDVGNVGRIVMPKRDAEAHlpALEQREGEMLEMDDfKLETTWNFKYRFwpNNKSRMYVLE-SAGGFVKQHGLQTGDILIIYKSS 386
                      799************************88888999******7778*******9989999999**99.99****************99433 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
Gene3DG3DSA:2.40.330.102.4E-24295395IPR015300DNA-binding pseudobarrel domain
CDDcd100173.28E-22296394No hitNo description
SuperFamilySSF1019361.83E-17296392IPR015300DNA-binding pseudobarrel domain
SMARTSM010197.6E-6297397IPR003340B3 DNA binding domain
PROSITE profilePS508639.065297397IPR003340B3 DNA binding domain
PfamPF023621.6E-13298385IPR003340B3 DNA binding domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0006355Biological Processregulation of transcription, DNA-templated
GO:0005634Cellular Componentnucleus
GO:0003677Molecular FunctionDNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 433 aa     Download sequence    Send to blast
MADAKGSSSS GGGSASGGQA AGHGNFTVGS QHNRYHRIPR AMLPPSIRHQ NIAHQQYLAG  60
MIHHPSQTIP VPMAPLPYVQ QYTMVPAPAM LPPQHLHGQS QISQENLQDK APSNNNGAAP  120
NVPTALQGCR PMYNGSAFMT FGHITASSNF FRQNATPCSF DTWTSNNMPR NHVYSTYHPA  180
VIEDHHVPPF HSNNHDTGPG FQTGFRVDQP LVPTSSPFPP ASSSSLSFPS TKISNGPAYS  240
KKAKKSDAKD LPIVFRSDMK SKKNDELDQT PASEPPSMDQ NGELTVRFSC REYRIILCKE  300
LTNSDVGNVG RIVMPKRDAE AHLPALEQRE GEMLEMDDFK LETTWNFKYR FWPNNKSRMY  360
VLESAGGFVK QHGLQTGDIL IIYKSSISSK FVVRGEKAIR PNAVRPVVNC GCKNELNNSE  420
ECGFNISLQT KKT
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
6j9b_A1e-332943982106B3 domain-containing transcription factor FUS3
6j9b_D1e-332943982106B3 domain-containing transcription factor FUS3
Search in ModeBase
Cis-element ? help Back to Top
SourceLink
PlantRegMapLPERR02G09050.1
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_025880492.10.0putative B3 domain-containing protein Os04g0676650
SwissprotQ7XKC40.0Y4765_ORYSJ; Putative B3 domain-containing protein Os04g0676650
TrEMBLA0A0D9VEB20.0A0A0D9VEB2_9ORYZ; Uncharacterized protein
STRINGLPERR02G09050.10.0(Leersia perrieri)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MonocotsOGMP118172835
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT3G24650.12e-32B3 family protein