PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

PlantRegMap/PlantTFDB v5.0

Plant Transcription Factor Database

Transcription Factor Information

Basic Information | Signature Domain | Sequence |

Basic Information? help Back to Top

TF ID

LPERR02G09850.1

Organism

Leersia perrieri

Taxonomic ID

77586

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Poales; Poaceae; BOP clade; Oryzoideae; Oryzeae; Oryzinae; Leersia

Family

MYB_related

Protein Properties

Length: 666aa MW: 74164.7 Da PI: 5.8233

Description

MYB_related family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
LPERR02G09850.1	genome	OGE	View CDS

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	Myb_DNA-binding	35.7	2e-11	351	384	2	37
SSS-HHHHHHHHHHHHHTTTT-HHHHHHHHTTTS-H CS Myb_DNA-binding 2 grWTteEdellvdavkqlGggtWktIartmgkgRtl 37 ++W++eE+++l++a + +G++ W+tI ++++ gR++ LPERR02G09850.1 351 QAWSQEEELRLIRAQQTYGNK-WSTIVKHFP-GRSR 384 68*****************.*****.97 PP

Protein Features ? help Back to Top

Database	Entry ID	E-value	Start	End	InterPro ID	Description
SuperFamily	SSF46689	3.21E-10	330	384	IPR009057	Homeodomain-like
PROSITE profile	PS51294	10.403	343	393	IPR017930	Myb domain
Gene3D	G3DSA:1.10.10.60	1.6E-10	344	384	IPR009057	Homeodomain-like
SMART	SM00717	5.8E-4	349	398	IPR001005	SANT/Myb domain
Pfam	PF00249	1.6E-9	351	385	IPR001005	SANT/Myb domain
CDD	cd00167	1.77E-7	352	386	No hit	No description

Gene Ontology ? help Back to Top
GO Term	GO Category	GO Description
GO:0003677	Molecular Function	DNA binding

Sequence ? help Back to Top
Protein Sequence Length: 666 aa Download sequence Send to blast
MEAASPTSSW RDWSSSIRWS SHPSVAAVCR YWRSVVPPSY PAWITPLLLN TADVGTTHMR 60 YYSPCFHKNF EVDGTLTYPS AKICCSAANR LATLCSSENQ LVLDTDLVSG SISGLPWLPA 120 DRCTFVVYDE GLRRMYAIDT VGLLCISRSI MKDDGKWDDW DLVYSPDDQL IPTLPISNPV 180 MHDGLLYLLG KDGRLALYDP CNHDEGFYIL DKPKIFGFES DDSYIFESDQ GELMAVLIGL 240 RGTPVHIVKL NEERMEWEKV ESLQGRTLFT GTPTTVMKNV EIKGMQNKVF LPKLYDWPET 300 VHGDTLKVTY KHCQEQELGK IGAGGPCKKD LQNVKDKWKH ALGPVINKQA QAWSQEEELR 360 LIRAQQTYGN KWSTIVKHFP GRSRSSGLLE RSSGLPENLP VSHNSDSNIL QLCDGSSDEN 420 QLLSDLQGSL KPKQGTSSKY KQGAGSIFDG SSDENHLLSD LQASLKAKQG SSSKCDGSSD 480 ENKLLSDLRA SLKSKQGTNT KSKQGFIEPR ENTDPSEGEI SVFMCTKGPD TDSGEVSQRI 540 RDRLNERKRA TKRLVFLSSP VELKVSAMAK SERPQQKSKQ MTQEVNIISP PAILQEFSPE 600 VPSECEKIVK SSLANCKQTK NTSDPCTPEQ HQANFSDLLD MSYCDGLMII PPAGCLNDDE 660 FGQINY

Sequence ? help Back to Top

Protein Sequence Length: 666 aa Download sequence Send to blast

MEAASPTSSW RDWSSSIRWS SHPSVAAVCR YWRSVVPPSY PAWITPLLLN TADVGTTHMR  60
YYSPCFHKNF EVDGTLTYPS AKICCSAANR LATLCSSENQ LVLDTDLVSG SISGLPWLPA  120
DRCTFVVYDE GLRRMYAIDT VGLLCISRSI MKDDGKWDDW DLVYSPDDQL IPTLPISNPV  180
MHDGLLYLLG KDGRLALYDP CNHDEGFYIL DKPKIFGFES DDSYIFESDQ GELMAVLIGL  240
RGTPVHIVKL NEERMEWEKV ESLQGRTLFT GTPTTVMKNV EIKGMQNKVF LPKLYDWPET  300
VHGDTLKVTY KHCQEQELGK IGAGGPCKKD LQNVKDKWKH ALGPVINKQA QAWSQEEELR  360
LIRAQQTYGN KWSTIVKHFP GRSRSSGLLE RSSGLPENLP VSHNSDSNIL QLCDGSSDEN  420
QLLSDLQGSL KPKQGTSSKY KQGAGSIFDG SSDENHLLSD LQASLKAKQG SSSKCDGSSD  480
ENKLLSDLRA SLKSKQGTNT KSKQGFIEPR ENTDPSEGEI SVFMCTKGPD TDSGEVSQRI  540
RDRLNERKRA TKRLVFLSSP VELKVSAMAK SERPQQKSKQ MTQEVNIISP PAILQEFSPE  600
VPSECEKIVK SSLANCKQTK NTSDPCTPEQ HQANFSDLLD MSYCDGLMII PPAGCLNDDE  660
FGQINY

Cis-element ? help Back to Top
Source	Link
PlantRegMap	LPERR02G09850.1

Regulation -- PlantRegMap ? help Back to Top
Source	Upstream Regulator	Target Gene
PlantRegMap	Retrieve	-

Annotation -- Protein ? help Back to Top
Source	Hit ID	E-value	Description
TrEMBL	A0A0D9VEL2	0.0	A0A0D9VEL2_9ORYZ; Uncharacterized protein
STRING	LPERR02G09850.3	0.0	(Leersia perrieri)

Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID	E-value	Description
AT5G11510.1	5e-10	myb domain protein 3r-4