PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID LPERR02G09850.2
Organism
Leersia perrieri
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Poales; Poaceae; BOP clade; Oryzoideae; Oryzeae; Oryzinae; Leersia
Family MYB_related
Protein Properties Length: 746aa    MW: 83019.7 Da    PI: 6.1448
Description MYB_related family protein
Gene Model
Gene Model ID Type Source Coding Sequence
LPERR02G09850.2genomeOGEView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1Myb_DNA-binding46.49.4e-15351392245
                      SSS-HHHHHHHHHHHHHTTTT-HHHHHHHHTTTS-HHHHHHHHH CS
  Myb_DNA-binding   2 grWTteEdellvdavkqlGggtWktIartmgkgRtlkqcksrwq 45 
                      ++W++eE+++l++a + +G++ W+tI ++++ gRt k +k++w+
  LPERR02G09850.2 351 QAWSQEEELRLIRAQQTYGNK-WSTIVKHFP-GRTCKAIKEHWR 392
                      68*******************.*********.***********8 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
SuperFamilySSF466897.69E-15330400IPR009057Homeodomain-like
PROSITE profilePS5129418.929343399IPR017930Myb domain
Gene3DG3DSA:1.10.10.608.9E-16344400IPR009057Homeodomain-like
SMARTSM007172.1E-12349397IPR001005SANT/Myb domain
PfamPF002492.2E-12351392IPR001005SANT/Myb domain
CDDcd001676.75E-12352392No hitNo description
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0003677Molecular FunctionDNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 746 aa     Download sequence    Send to blast
MEAASPTSSW RDWSSSIRWS SHPSVAAVCR YWRSVVPPSY PAWITPLLLN TADVGTTHMR  60
YYSPCFHKNF EVDGTLTYPS AKICCSAANR LATLCSSENQ LVLDTDLVSG SISGLPWLPA  120
DRCTFVVYDE GLRRMYAIDT VGLLCISRSI MKDDGKWDDW DLVYSPDDQL IPTLPISNPV  180
MHDGLLYLLG KDGRLALYDP CNHDEGFYIL DKPKIFGFES DDSYIFESDQ GELMAVLIGL  240
RGTPVHIVKL NEERMEWEKV ESLQGRTLFT GTPTTVMKNV EIKGMQNKVF LPKLYDWPET  300
VHGDTLKVTY KHCQEQELGK IGAGGPCKKD LQNVKDKWKH ALGPVINKQA QAWSQEEELR  360
LIRAQQTYGN KWSTIVKHFP GRTCKAIKEH WRVPMKRKLN SYLSSGFLEK NPGLPENLSV  420
PQISDSDLVQ QCDDSSDDNQ LLSDLQGSLK SKHGARSRSS GLLERSSGLP ENLPVSHNSD  480
SNILQLCDGS SDENQLLSDL QGSLKPKQGT SSKYKQGAGS IFDGSSDENH LLSDLQASLK  540
AKQGSSSKCD GSSDENKLLS DLRASLKSKQ GTNTKSKQGF IEPRENTDPS EGEISVFMCT  600
KGPDTDSGEV SQRIRDRLNE RKRATKRLVF LSSPVELKVS AMAKSERPQQ KSKQMTQEVN  660
IISPPAILQE FSPEVPSECE KIVKSSLANC KQTKNVCSSL KTSDPCTPEQ HQANFSDLLD  720
MSYCDGLMII PPAGCLNDDE FGQINY
Cis-element ? help Back to Top
SourceLink
PlantRegMapLPERR02G09850.2
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_015622738.11e-159transcription factor MYB64
TrEMBLA0A0D9VEL30.0A0A0D9VEL3_9ORYZ; Uncharacterized protein
STRINGLPERR02G09850.30.0(Leersia perrieri)
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT5G11510.26e-21myb domain protein 3r-4