PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID LPERR02G09850.3
Organism
Leersia perrieri
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Poales; Poaceae; BOP clade; Oryzoideae; Oryzeae; Oryzinae; Leersia
Family MYB_related
Protein Properties Length: 765aa    MW: 85133.2 Da    PI: 6.0348
Description MYB_related family protein
Gene Model
Gene Model ID Type Source Coding Sequence
LPERR02G09850.3genomeOGEView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1Myb_DNA-binding46.39.6e-15370411245
                      SSS-HHHHHHHHHHHHHTTTT-HHHHHHHHTTTS-HHHHHHHHH CS
  Myb_DNA-binding   2 grWTteEdellvdavkqlGggtWktIartmgkgRtlkqcksrwq 45 
                      ++W++eE+++l++a + +G++ W+tI ++++ gRt k +k++w+
  LPERR02G09850.3 370 QAWSQEEELRLIRAQQTYGNK-WSTIVKHFP-GRTCKAIKEHWR 411
                      68*******************.*********.***********8 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
SuperFamilySSF466899.62E-15349419IPR009057Homeodomain-like
PROSITE profilePS5129418.929362418IPR017930Myb domain
Gene3DG3DSA:1.10.10.601.2E-15364419IPR009057Homeodomain-like
SMARTSM007172.1E-12368416IPR001005SANT/Myb domain
PfamPF002492.3E-12370411IPR001005SANT/Myb domain
CDDcd001677.01E-12371411No hitNo description
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0003677Molecular FunctionDNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 765 aa     Download sequence    Send to blast
MEAASPTSSW RDWSSSIRWS SHPSVAAVCR YWRSVVPPSY PAWITPLLLN TADVGTTHMR  60
YYSPCFHKNF EVDGTLTYPS AKICCSAANR LATLCSSENQ LVLDTDLVSG SISGLPWLPA  120
DRCTFVVYDE GLRRMYAIDT VGLLCISRSI MKDDGKWDDW DLVYSPDDQL IPTLPISNPV  180
MHDGLLYLLG KDGRLALYDP CNHDEGFYIL DKPKIFGFES DDSYIFESDQ GELMAVLIGL  240
RGTPVHIVKL NEERMEWEKV ESLQGRTLFT GTPTTVMKNV EIKGMQNKVF LPKLYDWPET  300
VHGMQNKVFL PKLYDWPETV HVDLVLRDGE LAFVPKSSCA GAGGPCKKDL QNVKDKWKHA  360
LGPVINKQAQ AWSQEEELRL IRAQQTYGNK WSTIVKHFPG RTCKAIKEHW RVPMKRKLNS  420
YLSSGFLEKN PGLPENLSVP QISDSDLVQQ CDDSSDDNQL LSDLQGSLKS KHGARSRSSG  480
LLERSSGLPE NLPVSHNSDS NILQLCDGSS DENQLLSDLQ GSLKPKQGTS SKYKQGAGSI  540
FDGSSDENHL LSDLQASLKA KQGSSSKCDG SSDENKLLSD LRASLKSKQG TNTKSKQGFI  600
EPRENTDPSE GEISVFMCTK GPDTDSGEVS QRIRDRLNER KRATKRLVFL SSPVELKVSA  660
MAKSERPQQK SKQMTQEVNI ISPPAILQEF SPEVPSECEK IVKSSLANCK QTKNVCSSLK  720
TSDPCTPEQH QANFSDLLDM SYCDGLMIIP PAGCLNDDEF GQINY
Cis-element ? help Back to Top
SourceLink
PlantRegMapLPERR02G09850.3
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_015622738.11e-159transcription factor MYB64
TrEMBLA0A0D9VEL40.0A0A0D9VEL4_9ORYZ; Uncharacterized protein
STRINGLPERR02G09850.30.0(Leersia perrieri)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MonocotsOGMP165241011
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT5G11510.23e-21myb domain protein 3r-4