PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID LPERR02G09860.1
Organism
Leersia perrieri
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Poales; Poaceae; BOP clade; Oryzoideae; Oryzeae; Oryzinae; Leersia
Family MYB_related
Protein Properties Length: 500aa    MW: 55299 Da    PI: 8.4069
Description MYB_related family protein
Gene Model
Gene Model ID Type Source Coding Sequence
LPERR02G09860.1genomeOGEView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1Myb_DNA-binding22.72.3e-07202226126
                      TSSS-HHHHHHHHHHHHHTTTT-HHH CS
  Myb_DNA-binding   1 rgrWTteEdellvdavkqlGggtWkt 26 
                      +++W++eE+++l++a + +G++ W++
  LPERR02G09860.1 202 KQAWSQEEELRLIRAQQTYGNK-WSA 226
                      799*******************.*86 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
SMARTSM007171.1151198IPR001005SANT/Myb domain
PROSITE profilePS500907.248156196IPR017877Myb-like domain
Gene3DG3DSA:1.10.10.605.8E-15156203IPR009057Homeodomain-like
PfamPF139213.1E-10157213No hitNo description
CDDcd001675.39E-6158196No hitNo description
SuperFamilySSF466893.75E-14176226IPR009057Homeodomain-like
PROSITE profilePS500906.237197253IPR017877Myb-like domain
SMARTSM0071713201250IPR001005SANT/Myb domain
Gene3DG3DSA:1.10.10.601.8E-9204253IPR009057Homeodomain-like
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0003677Molecular FunctionDNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 500 aa     Download sequence    Send to blast
MPSQPCQKQV VGSCFYCLTI TRRERTAQIS PLLQPVPSDQ PHLAPALHFL VLAAVQAKSS  60
SAPQAQKRRF HPLFHPPPQT LFSPKHPPLA SSPSACTRSF GLAMGDAPGG FGESNDVYAA  120
MSLSGEGDTL KGTYKHCQEE QLGKIGAGGP CKKHFQNEDK ILIQMINSGQ TNWGTVACAI  180
PGRNAQQCRL RWTCTLDPAI NKQAWSQEEE LRLIRAQQTY GNKWSAMYVS NLFKRLSVTL  240
IVIYKQDKQC DQRTLEGSYE KKVKFDFSKK FLNSDSDILQ QCDGSSDENQ LLSDIQGRLK  300
SKQGTSSKSK QGASSKCDGL RARLKSKQGT NKKSKQEFIK PRENTDQSEG ECAEFMCTKG  360
PDTDSVDVSQ RIKDRVNERK RARKRLVLLS SPVELKVSAM AKSERPQQEG KQMSPEVNII  420
SPPAILQEFS PEVPSECEKM VEPLVADCKQ AKNVCSSLKT SDPCTLEQHL ADISDLLDMS  480
YCDGLMIIPP AGCANDDCFV
Nucleic Localization Signal ? help Back to Top
NLS
No. Start End Sequence
1377385ERKRARKRL
Cis-element ? help Back to Top
SourceLink
PlantRegMapLPERR02G09860.1
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_015622738.18e-91transcription factor MYB64
TrEMBLA0A0D9VEL50.0A0A0D9VEL5_9ORYZ; Uncharacterized protein
STRINGLPERR02G09860.70.0(Leersia perrieri)
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT5G11510.13e-20myb domain protein 3r-4