PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID LPERR02G09860.10
Organism
Leersia perrieri
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Poales; Poaceae; BOP clade; Oryzoideae; Oryzeae; Oryzinae; Leersia
Family MYB_related
Protein Properties Length: 532aa    MW: 58436 Da    PI: 8.3671
Description MYB_related family protein
Gene Model
Gene Model ID Type Source Coding Sequence
LPERR02G09860.10genomeOGEView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1Myb_DNA-binding45.32.1e-14171213145
                       TSSS-HHHHHHHHHHHHHTTTT-HHHHHHHHTTTS-HHHHHHHHH CS
   Myb_DNA-binding   1 rgrWTteEdellvdavkqlGggtWktIartmgkgRtlkqcksrwq 45 
                       +++W++eE+++l++a + +G++ W++  ++++ gRt + +k++w+
  LPERR02G09860.10 171 KQAWSQEEELRLIRAQQTYGNK-WSAMVEHFP-GRTNNAIKEHWR 213
                       799*******************.*********.***********7 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
SMARTSM007171.1120167IPR001005SANT/Myb domain
Gene3DG3DSA:1.10.10.606.6E-15125172IPR009057Homeodomain-like
PROSITE profilePS500907.248125165IPR017877Myb-like domain
CDDcd001675.90E-6127165No hitNo description
SuperFamilySSF466891.03E-22145221IPR009057Homeodomain-like
PROSITE profilePS5129420.696166220IPR017930Myb domain
SMARTSM007171.2E-11170218IPR001005SANT/Myb domain
PfamPF002491.8E-12171213IPR001005SANT/Myb domain
CDDcd001672.37E-10173213No hitNo description
Gene3DG3DSA:1.10.10.601.0E-18173221IPR009057Homeodomain-like
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0003677Molecular FunctionDNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 532 aa     Download sequence    Send to blast
MPSQPCQKQL LLLSDYHKER ADGSDLTAAA TSPVRSAALG SCTPLPRARR RPSKKQQCTP  60
STETALPSPF PPSAPNPLLP EASAARFLPF CMHPQGDTLK GTYKHCQEEQ LGKIGAGGPC  120
KKHFQNEDKI LIQMINSGQT NWGTVACAIP GRNAQQCRLR WTCTLDPAIN KQAWSQEEEL  180
RLIRAQQTYG NKWSAMVEHF PGRTNNAIKE HWRGPMKRKL NSYLSSGFLE KIPDLPASLK  240
SKHGARSKSS GLFEKSSGLP ENLSVSQNSD SDILQQCDGS SDENQLLSDI QGRLKSKQGT  300
SSKSKQGASS KCDGSSDENQ LLSDLRSSLK SKQGASSKRD NSSDEDELLS GLRARLKSKQ  360
GTNKKSKQEF IKPRENTDQS EGECAEFMCT KGPDTDSVDV SQRIKDRVNE RKRARKRLVL  420
LSSPVELKVS AMAKSERPQQ EGKQMSPEVN IISPPAILQE FSPEVPSECE KMVEPLVADC  480
KQAKNVCSSL KTSDPCTLEQ HLADISDLLD MSYCDGLMII PPAGCANDDC FV
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
1a5j_A4e-1912522212110B-MYB
Search in ModeBase
Nucleic Localization Signal ? help Back to Top
NLS
No. Start End Sequence
1409417ERKRARKRL
Cis-element ? help Back to Top
SourceLink
PlantRegMapLPERR02G09860.10
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_015622738.11e-169transcription factor MYB64
TrEMBLA0A0D9VEL60.0A0A0D9VEL6_9ORYZ; Uncharacterized protein
STRINGLPERR02G09860.70.0(Leersia perrieri)
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT5G11510.14e-34myb domain protein 3r-4