PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID LPERR02G09860.3
Organism
Leersia perrieri
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Poales; Poaceae; BOP clade; Oryzoideae; Oryzeae; Oryzinae; Leersia
Family MYB_related
Protein Properties Length: 469aa    MW: 52041.3 Da    PI: 8.4798
Description MYB_related family protein
Gene Model
Gene Model ID Type Source Coding Sequence
LPERR02G09860.3genomeOGEView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1Myb_DNA-binding22.82.2e-07171195126
                      TSSS-HHHHHHHHHHHHHTTTT-HHH CS
  Myb_DNA-binding   1 rgrWTteEdellvdavkqlGggtWkt 26 
                      +++W++eE+++l++a + +G++ W++
  LPERR02G09860.3 171 KQAWSQEEELRLIRAQQTYGNK-WSA 195
                      799*******************.*86 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
SMARTSM007171.1120167IPR001005SANT/Myb domain
Gene3DG3DSA:1.10.10.605.3E-15125172IPR009057Homeodomain-like
PROSITE profilePS500907.248125165IPR017877Myb-like domain
PfamPF139212.8E-10126182No hitNo description
CDDcd001674.89E-6127165No hitNo description
SuperFamilySSF466893.14E-14145195IPR009057Homeodomain-like
PROSITE profilePS500906.237166222IPR017877Myb-like domain
SMARTSM0071713170219IPR001005SANT/Myb domain
Gene3DG3DSA:1.10.10.601.7E-9173222IPR009057Homeodomain-like
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0003677Molecular FunctionDNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 469 aa     Download sequence    Send to blast
MPSQPCQKQL LLLSDYHKER ADGSDLTAAA TSPVRSAALG SCTPLPRARR RPSKKQQCTP  60
STETALPSPF PPSAPNPLLP EASAARFLPF CMHPQGDTLK GTYKHCQEEQ LGKIGAGGPC  120
KKHFQNEDKI LIQMINSGQT NWGTVACAIP GRNAQQCRLR WTCTLDPAIN KQAWSQEEEL  180
RLIRAQQTYG NKWSAMYVSN LFKRLSVTLI VIYKQDKQCD QRTLEGSYEK KVKFDFSKKF  240
LNSDSDILQQ CDGSSDENQL LSDIQGRLKS KQGTSSKSKQ GASSKCDGLR ARLKSKQGTN  300
KKSKQEFIKP RENTDQSEGE CAEFMCTKGP DTDSVDVSQR IKDRVNERKR ARKRLVLLSS  360
PVELKVSAMA KSERPQQEGK QMSPEVNIIS PPAILQEFSP EVPSECEKMV EPLVADCKQA  420
KNVCSSLKTS DPCTLEQHLA DISDLLDMSY CDGLMIIPPA GCANDDCFV
Nucleic Localization Signal ? help Back to Top
NLS
No. Start End Sequence
1346354ERKRARKRL
Cis-element ? help Back to Top
SourceLink
PlantRegMapLPERR02G09860.3
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_015622738.12e-91transcription factor MYB64
TrEMBLA0A0D9VEL80.0A0A0D9VEL8_9ORYZ; Uncharacterized protein
STRINGLPERR02G09860.70.0(Leersia perrieri)
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT5G11510.12e-20myb domain protein 3r-4