PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
Home  TFext  BLAST  Prediction  Download  Help  About  Links  PlantRegMap
(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID LPERR02G09860.5
Organism
Leersia perrieri
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Poales; Poaceae; BOP clade; Oryzoideae; Oryzeae; Oryzinae; Leersia
Family MYB_related
Protein Properties Length: 568aa    MW: 63094.5 Da    PI: 8.2231
Description MYB_related family protein
Gene Model
Gene Model ID Type Source Coding Sequence
LPERR02G09860.5genomeOGEView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1Myb_DNA-binding22.52.7e-07233257126
                      TSSS-HHHHHHHHHHHHHTTTT-HHH CS
  Myb_DNA-binding   1 rgrWTteEdellvdavkqlGggtWkt 26 
                      +++W++eE+++l++a + +G++ W++
  LPERR02G09860.5 233 KQAWSQEEELRLIRAQQTYGNK-WSA 257
                      799*******************.*86 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
PROSITE profilePS512949.119166231IPR017930Myb domain
SMARTSM007170.47170229IPR001005SANT/Myb domain
CDDcd001672.35E-6173227No hitNo description
Gene3DG3DSA:1.10.10.601.7E-14189236IPR009057Homeodomain-like
PfamPF139217.6E-10189244No hitNo description
SuperFamilySSF466894.08E-14207257IPR009057Homeodomain-like
PROSITE profilePS500906.237228284IPR017877Myb-like domain
SMARTSM0071713232281IPR001005SANT/Myb domain
Gene3DG3DSA:1.10.10.604.2E-9237284IPR009057Homeodomain-like
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0003677Molecular FunctionDNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 568 aa     Download sequence    Send to blast
MPSQPCQKQV VGSCFYCLTI TRRERTAQIS PLLQPVPSDQ PHLAPALHFL VLAAVQAKSS  60
SAPQAQKRRF HPLFHPPPQT LFSPKHPPLA SSPSACTRSF GLAMGDAPGG FGESNDVYAA  120
MSLSGEGDTL KGTYKHCQEE QLGKIGAGGP CKKHFQNVKD KFNIEKSGKT RQPWSREESD  180
FNFFCFLYED KILIQMINSG QTNWGTVACA IPGRNAQQCR LRWTCTLDPA INKQAWSQEE  240
ELRLIRAQQT YGNKWSAMYV SNLFKRLSVT LIVIYKQDKQ CDQRTLEGSY EKKVKFDFSK  300
KFLNSDSDIL QQCDGSSDEN QLLSDIQGRL KSKQGTSSKS KQGASSKCDG SSDENQLLSD  360
LRSSLKSKQG ASSKRDNSSD EDELLSGLRA RLKSKQGTNK KSKQEFIKPR ENTDQSEGEC  420
AEFMCTKGPD TDSVDVSQRI KDRVNERKRA RKRLVLLSSP VELKVSAMAK SERPQQEGKQ  480
MSPEVNIISP PAILQEFSPE VPSECEKMVE PLVADCKQAK NVCSSLKTSD PCTLEQHLAD  540
ISDLLDMSYC DGLMIIPPAG CANDDCFV
Nucleic Localization Signal ? help Back to Top
NLS
No. Start End Sequence
1445453ERKRARKRL
Cis-element ? help Back to Top
SourceLink
PlantRegMapLPERR02G09860.5
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_015622738.11e-145transcription factor MYB64
TrEMBLA0A0D9VEM00.0A0A0D9VEM0_9ORYZ; Uncharacterized protein
STRINGLPERR02G09860.70.0(Leersia perrieri)
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT5G11510.12e-20myb domain protein 3r-4