PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID LPERR02G09860.7
Organism
Leersia perrieri
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Poales; Poaceae; BOP clade; Oryzoideae; Oryzeae; Oryzinae; Leersia
Family MYB_related
Protein Properties Length: 594aa    MW: 65523 Da    PI: 8.3344
Description MYB_related family protein
Gene Model
Gene Model ID Type Source Coding Sequence
LPERR02G09860.7genomeOGEView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1Myb_DNA-binding45.12.4e-14233275145
                      TSSS-HHHHHHHHHHHHHTTTT-HHHHHHHHTTTS-HHHHHHHHH CS
  Myb_DNA-binding   1 rgrWTteEdellvdavkqlGggtWktIartmgkgRtlkqcksrwq 45 
                      +++W++eE+++l++a + +G++ W++  ++++ gRt + +k++w+
  LPERR02G09860.7 233 KQAWSQEEELRLIRAQQTYGNK-WSAMVEHFP-GRTNNAIKEHWR 275
                      799*******************.*********.***********7 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
SMARTSM007170.47170229IPR001005SANT/Myb domain
CDDcd001672.50E-6173227No hitNo description
PROSITE profilePS500907.166189227IPR017877Myb-like domain
Gene3DG3DSA:1.10.10.601.9E-14189236IPR009057Homeodomain-like
SuperFamilySSF466891.22E-22207283IPR009057Homeodomain-like
PROSITE profilePS5129420.696228282IPR017930Myb domain
SMARTSM007171.2E-11232280IPR001005SANT/Myb domain
PfamPF002492.1E-12233275IPR001005SANT/Myb domain
CDDcd001672.86E-10235275No hitNo description
Gene3DG3DSA:1.10.10.601.1E-18237283IPR009057Homeodomain-like
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0003677Molecular FunctionDNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 594 aa     Download sequence    Send to blast
MPSQPCQKQV VGSCFYCLTI TRRERTAQIS PLLQPVPSDQ PHLAPALHFL VLAAVQAKSS  60
SAPQAQKRRF HPLFHPPPQT LFSPKHPPLA SSPSACTRSF GLAMGDAPGG FGESNDVYAA  120
MSLSGEGDTL KGTYKHCQEE QLGKIGAGGP CKKHFQNVKD KFNIEKSGKT RQPWSREESD  180
FNFFCFLYED KILIQMINSG QTNWGTVACA IPGRNAQQCR LRWTCTLDPA INKQAWSQEE  240
ELRLIRAQQT YGNKWSAMVE HFPGRTNNAI KEHWRGPMKR KLNSYLSSGF LEKIPDLPAS  300
LKSKHGARSK SSGLFEKSSG LPENLSVSQN SDSDILQQCD GSSDENQLLS DIQGRLKSKQ  360
GTSSKSKQGA SSKCDGSSDE NQLLSDLRSS LKSKQGASSK RDNSSDEDEL LSGLRARLKS  420
KQGTNKKSKQ EFIKPRENTD QSEGECAEFM CTKGPDTDSV DVSQRIKDRV NERKRARKRL  480
VLLSSPVELK VSAMAKSERP QQEGKQMSPE VNIISPPAIL QEFSPEVPSE CEKMVEPLVA  540
DCKQAKNVCS SLKTSDPCTL EQHLADISDL LDMSYCDGLM IIPPAGCAND DCFV
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
1a5j_A5e-201712847110B-MYB
Search in ModeBase
Nucleic Localization Signal ? help Back to Top
NLS
No. Start End Sequence
1471479ERKRARKRL
Cis-element ? help Back to Top
SourceLink
PlantRegMapLPERR02G09860.7
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_015622738.11e-175transcription factor MYB64
TrEMBLA0A0D9VEM20.0A0A0D9VEM2_9ORYZ; Uncharacterized protein
STRINGLPERR02G09860.70.0(Leersia perrieri)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MonocotsOGMP165241011
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT5G11510.14e-34myb domain protein 3r-4