PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID LPERR02G09860.8
Organism
Leersia perrieri
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Poales; Poaceae; BOP clade; Oryzoideae; Oryzeae; Oryzinae; Leersia
Family MYB_related
Protein Properties Length: 563aa    MW: 61693.7 Da    PI: 8.2892
Description MYB_related family protein
Gene Model
Gene Model ID Type Source Coding Sequence
LPERR02G09860.8genomeOGEView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1Myb_DNA-binding45.22.2e-14202244145
                      TSSS-HHHHHHHHHHHHHTTTT-HHHHHHHHTTTS-HHHHHHHHH CS
  Myb_DNA-binding   1 rgrWTteEdellvdavkqlGggtWktIartmgkgRtlkqcksrwq 45 
                      +++W++eE+++l++a + +G++ W++  ++++ gRt + +k++w+
  LPERR02G09860.8 202 KQAWSQEEELRLIRAQQTYGNK-WSAMVEHFP-GRTNNAIKEHWR 244
                      799*******************.*********.***********7 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
SMARTSM007171.1151198IPR001005SANT/Myb domain
PROSITE profilePS500907.248156196IPR017877Myb-like domain
Gene3DG3DSA:1.10.10.607.2E-15156203IPR009057Homeodomain-like
CDDcd001676.40E-6158196No hitNo description
SuperFamilySSF466891.15E-22176252IPR009057Homeodomain-like
PROSITE profilePS5129420.696197251IPR017930Myb domain
SMARTSM007171.2E-11201249IPR001005SANT/Myb domain
PfamPF002492.0E-12202244IPR001005SANT/Myb domain
Gene3DG3DSA:1.10.10.601.1E-18204252IPR009057Homeodomain-like
CDDcd001672.61E-10204244No hitNo description
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0003677Molecular FunctionDNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 563 aa     Download sequence    Send to blast
MPSQPCQKQV VGSCFYCLTI TRRERTAQIS PLLQPVPSDQ PHLAPALHFL VLAAVQAKSS  60
SAPQAQKRRF HPLFHPPPQT LFSPKHPPLA SSPSACTRSF GLAMGDAPGG FGESNDVYAA  120
MSLSGEGDTL KGTYKHCQEE QLGKIGAGGP CKKHFQNEDK ILIQMINSGQ TNWGTVACAI  180
PGRNAQQCRL RWTCTLDPAI NKQAWSQEEE LRLIRAQQTY GNKWSAMVEH FPGRTNNAIK  240
EHWRGPMKRK LNSYLSSGFL EKIPDLPASL KSKHGARSKS SGLFEKSSGL PENLSVSQNS  300
DSDILQQCDG SSDENQLLSD IQGRLKSKQG TSSKSKQGAS SKCDGSSDEN QLLSDLRSSL  360
KSKQGASSKR DNSSDEDELL SGLRARLKSK QGTNKKSKQE FIKPRENTDQ SEGECAEFMC  420
TKGPDTDSVD VSQRIKDRVN ERKRARKRLV LLSSPVELKV SAMAKSERPQ QEGKQMSPEV  480
NIISPPAILQ EFSPEVPSEC EKMVEPLVAD CKQAKNVCSS LKTSDPCTLE QHLADISDLL  540
DMSYCDGLMI IPPAGCANDD CFV
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
1a5j_A2e-1915625312110B-MYB
1mse_C2e-191562519105C-Myb DNA-Binding Domain
1msf_C2e-191562519105C-Myb DNA-Binding Domain
Search in ModeBase
Nucleic Localization Signal ? help Back to Top
NLS
No. Start End Sequence
1440448ERKRARKRL
Cis-element ? help Back to Top
SourceLink
PlantRegMapLPERR02G09860.8
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_015622738.11e-168transcription factor MYB64
TrEMBLA0A0D9VEM30.0A0A0D9VEM3_9ORYZ; Uncharacterized protein
STRINGLPERR02G09860.70.0(Leersia perrieri)
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT5G11510.15e-34myb domain protein 3r-4