PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID LPERR02G10390.1
Organism
Leersia perrieri
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Poales; Poaceae; BOP clade; Oryzoideae; Oryzeae; Oryzinae; Leersia
Family M-type_MADS
Protein Properties Length: 211aa    MW: 23537 Da    PI: 11.0748
Description M-type_MADS family protein
Gene Model
Gene Model ID Type Source Coding Sequence
LPERR02G10390.1genomeOGEView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1SRF-TF66.92e-212067249
                     ---SHHHHHHHHHHHHHHHHHHHHHHHHHHT-EEEEEEE-TTSEEEEE CS
           SRF-TF  2 rienksnrqvtfskRrngilKKAeELSvLCdaevaviifsstgklyey 49
                     rie++  rqv fskRr+g +KKA+ELS+LC a+v  i+fs+ gk y +
  LPERR02G10390.1 20 RIESEEARQVCFSKRRAGFFKKASELSILCSADVVAIVFSPAGKAYSF 67
                     8*******************************************9988 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
PROSITE profilePS5006626.0161171IPR002100Transcription factor, MADS-box
SMARTSM004321.1E-301170IPR002100Transcription factor, MADS-box
SuperFamilySSF554558.5E-271288IPR002100Transcription factor, MADS-box
CDDcd002653.23E-361280No hitNo description
PRINTSPR004049.7E-201333IPR002100Transcription factor, MADS-box
PfamPF003191.5E-242067IPR002100Transcription factor, MADS-box
PRINTSPR004049.7E-203348IPR002100Transcription factor, MADS-box
PRINTSPR004049.7E-204869IPR002100Transcription factor, MADS-box
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0006355Biological Processregulation of transcription, DNA-templated
GO:0005634Cellular Componentnucleus
GO:0003677Molecular FunctionDNA binding
GO:0046983Molecular Functionprotein dimerization activity
Sequence ? help Back to Top
Protein Sequence    Length: 211 aa     Download sequence    Send to blast
MVAAARRRPS LGRQKIEIRR IESEEARQVC FSKRRAGFFK KASELSILCS ADVVAIVFSP  60
AGKAYSFGHP SVDYLLERFM GPNTGNNNNI NTNTSRPGVW VKRGRVEGEL NRQCGELRTM  120
VEAQRMRQET MEEMMDKERA ARNRAAAWID TDVAHMSAEE LVGFGAGLMA VQGAVVARAD  180
QMLRDALLIG RRPTNNTSRG KGAGFFPVRR F
Cis-element ? help Back to Top
SourceLink
PlantRegMapLPERR02G10390.1
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Nucleotide ? help Back to Top
Source Hit ID E-value Description
GenBankAP0057891e-69AP005789.3 Oryza sativa Japonica Group genomic DNA, chromosome 9, PAC clone:P0563F09.
GenBankAP0058841e-69AP005884.3 Oryza sativa Japonica Group genomic DNA, chromosome 9, PAC clone:P0598D02.
GenBankAP0149651e-69AP014965.1 Oryza sativa Japonica Group DNA, chromosome 9, cultivar: Nipponbare, complete sequence.
GenBankCP0126171e-69CP012617.1 Oryza sativa Indica Group cultivar RP Bio-226 chromosome 9 sequence.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_006646746.15e-83PREDICTED: agamous-like MADS-box protein AGL29
TrEMBLA0A0D9VEU71e-153A0A0D9VEU7_9ORYZ; Uncharacterized protein
STRINGLPERR02G10390.11e-154(Leersia perrieri)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MonocotsOGMP122436128
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT4G36590.16e-23M-type_MADS family protein