PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID LPERR02G10910.1
Organism
Leersia perrieri
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Poales; Poaceae; BOP clade; Oryzoideae; Oryzeae; Oryzinae; Leersia
Family NAC
Protein Properties Length: 338aa    MW: 37858.9 Da    PI: 4.2824
Description NAC family protein
Gene Model
Gene Model ID Type Source Coding Sequence
LPERR02G10910.1genomeOGEView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1NAM47.94.2e-15101381127
              NAM   1 lppGfrFhPtdeelvveyLkkkvegkkleleevikevdiykvePwdLpk....kvka.eekewyfFskrdkkyatgkrknr.atksgyWkatgk 88 
                      l pG++F+Ptde lv  +L + ++++ l+l+ v+   d   + Pw+L           +    yf s++  +     r++r ++  g+W ++ +
  LPERR02G10910.1  10 LSPGYKFDPTDEMLVELFLLPFLRREGLPLSGVVFLHDTRILPPWTLLDrhglD--VvDGAGAYFISPAVAR-----RQSRsVAGGGRWVKQQR 96 
                      579***************************99888889999******6323321..2355688999998664.....677758889***98876 PP

              NAM  89 ...dkevlskkgelvglkktLvfykgrapkgektdWvmheyr 127
                         + ev + +++  ++k ++ f++  + ++  t Wvmhe +
  LPERR02G10910.1  97 alrEGEVAVGGEAFRWVKSSFSFHRDGDGRSGATGWVMHEIS 138
                      454778888788889*********887777789*******86 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
SuperFamilySSF1019412.09E-264159IPR003441NAC domain
PROSITE profilePS5100524.0810159IPR003441NAC domain
PfamPF023653.5E-1212138IPR003441NAC domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0006355Biological Processregulation of transcription, DNA-templated
GO:0005634Cellular Componentnucleus
GO:0003677Molecular FunctionDNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 338 aa     Download sequence    Send to blast
MVTAAESQGL SPGYKFDPTD EMLVELFLLP FLRREGLPLS GVVFLHDTRI LPPWTLLDRH  60
GLDVVDGAGA YFISPAVARR QSRSVAGGGR WVKQQRALRE GEVAVGGEAF RWVKSSFSFH  120
RDGDGRSGAT GWVMHEISVV PPPGSAIAST HTACRIFFSG KGRNRKRVPD GYVVGVNQEY  180
AFVPQQQQSS QDCFLQEPLV ESQQFLDQMQ SNQGQEYGGA CYTQQNNQDQ EQSNQEYFPE  240
AEQSNQQFLD QLLPALEQSN QDVYIDQNLC YIAPEQQQQQ QQNNQELVCE DLGRLVFQGD  300
ATQWQQPDGL DGGGGALSWR EYMDDAEMQR IIDGLLED
Cis-element ? help Back to Top
SourceLink
PlantRegMapLPERR02G10910.1
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
TrEMBLA0A0D9VF100.0A0A0D9VF10_9ORYZ; Uncharacterized protein
STRINGLPERR02G10910.10.0(Leersia perrieri)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MonocotsOGMP143261123
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT1G33280.11e-08NAC domain containing protein 15