PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID LPERR02G10920.1
Organism
Leersia perrieri
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Poales; Poaceae; BOP clade; Oryzoideae; Oryzeae; Oryzinae; Leersia
Family NAC
Protein Properties Length: 229aa    MW: 25362.3 Da    PI: 7.914
Description NAC family protein
Gene Model
Gene Model ID Type Source Coding Sequence
LPERR02G10920.1genomeOGEView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1NAM66.38.7e-21141481126
              NAM   1 lppGfrFhPtdeelvveyLkkkvegkkleleevikevdiykvePwdLp.k..kvka....eekew.yfFskrdkkyatgkrknr.atksgyWka 85 
                      l pGf+F+Ptde lv +yL ++++g++l+++ v+   d  k+ Pw L  +  k  +    +++e  yf ++++ + a++ r  r ++  g+W +
  LPERR02G10920.1  14 LSPGFKFEPTDEMLVEHYLLPHLRGENLPFAGVVFVDDPRKLPPWALLdRhgK--GgdrdRDREGaYFIAPAA-AVAKDGRLARsVAGGGRWVN 104
                      579***************************8888888**********633331..233333334426666655.556666777758999***98 PP

              NAM  86 tgk...dkevlskkgelvglkktLvfykgrapkgektdWvmhey 126
                      + k   + +v++ +++  ++k ++ f++  +++   t Wvmhe 
  LPERR02G10920.1 105 QKKregEGTVVVGGEAFRWVKSSFSFHRDGDRRRGATGWVMHEV 148
                      777444567888788889*********877777779******95 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
SuperFamilySSF1019414.05E-307170IPR003441NAC domain
PROSITE profilePS5100524.54814170IPR003441NAC domain
PfamPF023651.1E-1416147IPR003441NAC domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0006355Biological Processregulation of transcription, DNA-templated
GO:0005634Cellular Componentnucleus
GO:0003677Molecular FunctionDNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 229 aa     Download sequence    Send to blast
MAVVKTTAAE AVGLSPGFKF EPTDEMLVEH YLLPHLRGEN LPFAGVVFVD DPRKLPPWAL  60
LDRHGKGGDR DRDREGAYFI APAAAVAKDG RLARSVAGGG RWVNQKKREG EGTVVVGGEA  120
FRWVKSSFSF HRDGDRRRGA TGWVMHEVAF VPPPGSAVAA THRACHIFFT SHGQHRKRIP  180
DGYDAAVKKE PLEKPLDHQE QSNQDQEQSN HQDQEQRIER DGSGEAVSR
Cis-element ? help Back to Top
SourceLink
PlantRegMapLPERR02G10920.1
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_015649258.16e-48uncharacterized protein LOC107275324
TrEMBLA0A0D9VF111e-167A0A0D9VF11_9ORYZ; Uncharacterized protein
STRINGLPERR02G10920.11e-167(Leersia perrieri)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MonocotsOGMP143261123
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT3G10480.14e-08NAC domain containing protein 50