PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

PlantRegMap/PlantTFDB v5.0

Plant Transcription Factor Database

Transcription Factor Information

Basic Information | Signature Domain | Sequence |

Basic Information? help Back to Top

TF ID

LPERR02G11190.1

Organism

Leersia perrieri

Taxonomic ID

77586

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Poales; Poaceae; BOP clade; Oryzoideae; Oryzeae; Oryzinae; Leersia

Family

C3H

Protein Properties

Length: 329aa MW: 36101.8 Da PI: 7.4319

Description

C3H family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
LPERR02G11190.1	genome	OGE	View CDS

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	zf-CCCH	38.2	2.4e-12	188	213	1	26
--S---SGGGGTS--TTTTT-SS-SS CS zf-CCCH 1 yktelCrffartGtCkyGdrCkFaHg 26 y +C+++ +tG+C yGd+CkF+H+ LPERR02G11190.1 188 YQPDICKDYKETGYCGYGDSCKFMHD 213 67789********************7 PP

Protein Features ? help Back to Top

Database	Entry ID	E-value	Start	End	InterPro ID	Description
SuperFamily	SSF90229	1.96E-9	186	218	IPR000571	Zinc finger, CCCH-type
PROSITE profile	PS50103	14.878	187	215	IPR000571	Zinc finger, CCCH-type
SMART	SM00356	1.1E-7	187	214	IPR000571	Zinc finger, CCCH-type
Pfam	PF00642	4.5E-10	188	213	IPR000571	Zinc finger, CCCH-type
Gene3D	G3DSA:4.10.1000.10	1.6E-12	188	218	IPR000571	Zinc finger, CCCH-type
Gene3D	G3DSA:3.30.40.10	9.5E-14	259	309	IPR013083	Zinc finger, RING/FYVE/PHD-type
SuperFamily	SSF57850	9.24E-14	267	310	No hit	No description
Pfam	PF13920	9.6E-9	267	308	No hit	No description
PROSITE profile	PS50089	10.689	268	306	IPR001841	Zinc finger, RING-type
CDD	cd00162	2.85E-8	268	309	No hit	No description
SMART	SM00184	7.4E-5	268	305	IPR001841	Zinc finger, RING-type
PROSITE pattern	PS00518	0	283	292	IPR017907	Zinc finger, RING-type, conserved site

Gene Ontology ? help Back to Top
GO Term	GO Category	GO Description
GO:0005515	Molecular Function	protein binding
GO:0008270	Molecular Function	zinc ion binding

Sequence ? help Back to Top
Protein Sequence Length: 329 aa Download sequence Send to blast
MADGGGGGGE AGSGGSAPVC SFVRKPPKNI RKRPTARAGS DDEGDDESSG AIAAARAKKA 60 ASSTSKLFFS SADGSSEPRR FQYESSRTIQ ASTDSRATAT LETETEFDRD ARAIRERQLK 120 QAEESLKKNP SAPASGSGSG EVYKGIHGYT DYKAGFRREH TVSSEKAGGS HGPLRASAHI 180 RLSARFDYQP DICKDYKETG YCGYGDSCKF MHDRGDYKSG WQIEKEWEEA EKARKRRIAM 240 RGGDGSDGEA GEEEDDDDDD EEALPFACFI CREPFVDPVV TKCKHYFCEH CALKHHSRNK 300 KCFVCNKPTL GIFNAAQEIR KKMAQDKKQ

3D Structure ? help Back to Top

PDB ID	Evalue	Query Start	Query End	Hit Start	Hit End	Description
5z56_M	1e-62	83	323	100	317	RING finger protein 113A
5z58_M	1e-62	83	323	100	317	RING finger protein 113A
6ff4_t	1e-62	83	323	100	317	RING finger protein 113A
6ff7_t	1e-62	83	323	100	317	RING finger protein 113A
Search in ModeBase

Cis-element ? help Back to Top
Source	Link
PlantRegMap	LPERR02G11190.1

Regulation -- PlantRegMap ? help Back to Top
Source	Upstream Regulator	Target Gene
PlantRegMap	Retrieve	-

Annotation -- Nucleotide ? help Back to Top
Source	Hit ID	E-value	Description
GenBank	CT831567	0.0	CT831567.1 Oryza sativa (indica cultivar-group) cDNA clone:OSIGCSA018I20, full insert sequence.

Annotation -- Protein ? help Back to Top
Source	Hit ID	E-value	Description
Refseq	XP_020156391.1	0.0	zinc finger CCCH domain-containing protein 15
Swissprot	Q6K4V3	1e-176	C3H15_ORYSJ; Zinc finger CCCH domain-containing protein 15
TrEMBL	A0A0D9VF43	0.0	A0A0D9VF43_9ORYZ; Uncharacterized protein
STRING	LPERR02G11190.2	0.0	(Leersia perrieri)

Orthologous Group ? help Back to Top
Lineage	Orthologous Group ID	Taxa Number	Gene Number
Monocots	OGMP8071	36	45

Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID	E-value	Description
AT1G01350.1	1e-118	C3H family protein

Publications ? help Back to Top
Kikuchi S, et al. Collection, mapping, and annotation of over 28,000 cDNA clones from japonica rice. Science, 2003. 301(5631): p. 376-9 [PMID:12869764]