PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID LPERR02G11650.1
Organism
Leersia perrieri
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Poales; Poaceae; BOP clade; Oryzoideae; Oryzeae; Oryzinae; Leersia
Family MYB_related
Protein Properties Length: 697aa    MW: 78541.4 Da    PI: 5.0258
Description MYB_related family protein
Gene Model
Gene Model ID Type Source Coding Sequence
LPERR02G11650.1genomeOGEView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1Myb_DNA-binding22.42.8e-07547588144
                      TSSS-HHHHHHHHHHHHHTTTT-HHHHHHHHTTTS-HHHHHHHH CS
  Myb_DNA-binding   1 rgrWTteEdellvdavkqlGggtWktIartmgkgRtlkqcksrw 44 
                      r +W++ + +l++++ +q+G++ ++ I + ++  ++++q++ ++
  LPERR02G11650.1 547 RAKWSKSDTDLFYQGLRQFGSD-FAMIQHLFP-DKSRNQVRQKF 588
                      569*******************.*********.********998 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
SuperFamilySSF466898.22E-10538594IPR009057Homeodomain-like
PfamPF159632.1E-25540621No hitNo description
SMARTSM007178.6E-9546594IPR001005SANT/Myb domain
CDDcd001676.75E-6549589No hitNo description
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0003677Molecular FunctionDNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 697 aa     Download sequence    Send to blast
MIDDEADFGN IIDAPAEGQT AAKFRPKAEE ERVSKFQPKN RAKTSKATSK SRRTDQKAGA  60
STGDVILQSK EDGKNQAGCS DKLQHPPSRH QETVQIPHSQ AHLGAHDSTI DDIVNFHSII  120
EEPAQKEVAA NFQPNLRLKA GGASPGVAET SDAAAVVTPE FGFSSVDVVS QDAEEDSHRE  180
GFRDDSCQKH MDEEAITVSD TGPPQDLDAT VDLDSHAEML NSHPDGSPSI IGERSVEATV  240
KFQPYARRKK GKGKSVSFAP PNDSDVVTPT DTNSDRSNLI HSCQDIAIGE NLSNLPQKAA  300
EKVCITDEHH LDDQEYSYTE NQYHEGEPSD HVIEQELKRD VRETGTSMKL RSREKLQKDG  360
IREHTADDNM DEDYAEPPSN EQDNDSGDEY TAGGKQKGRR KPREKNISKE PSRGTKRTLG  420
DSTIEESQKQ KVQKNKSKAS SGGQKETSKD SSVEKPEKKL THRIRQKRMK EVKTLLETPD  480
HEINRMKLSG KEIPSGLSSS NHSSSQFEDM DDGFNEQENW DNDRTENHVV ENATKLNYHS  540
YMNRQKRAKW SKSDTDLFYQ GLRQFGSDFA MIQHLFPDKS RNQVRQKFKA EERRHPMQVH  600
DAIMHRSRDN LYFKQVIKQL NIEDVQPDVN NTHEQEGAPN EEDPGKKNIS GEFINEEEEN  660
GSNWSDKDLD MHGSEFEEKE HFSTNADDDL GDVFDWY
Cis-element ? help Back to Top
SourceLink
PlantRegMapLPERR02G11650.1
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Nucleotide ? help Back to Top
Source Hit ID E-value Description
GenBankAC0968561e-179AC096856.7 Oryza sativa chromosome 3 BAC OSJNBa0075M12 genomic sequence, complete sequence.
GenBankAP0149591e-179AP014959.1 Oryza sativa Japonica Group DNA, chromosome 3, cultivar: Nipponbare, complete sequence.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_015633004.10.0uncharacterized protein LOC9267825
TrEMBLA0A0D9VFB20.0A0A0D9VFB2_9ORYZ; Uncharacterized protein
STRINGLPERR02G11650.20.0(Leersia perrieri)
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT4G39160.12e-32MYB_related family protein