PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

PlantRegMap/PlantTFDB v5.0

Plant Transcription Factor Database

Transcription Factor Information

Basic Information | Signature Domain | Sequence |

Basic Information? help Back to Top

TF ID

LPERR02G11650.2

Organism

Leersia perrieri

Taxonomic ID

77586

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Poales; Poaceae; BOP clade; Oryzoideae; Oryzeae; Oryzinae; Leersia

Family

MYB_related

Protein Properties

Length: 850aa MW: 94895.4 Da PI: 4.8584

Description

MYB_related family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
LPERR02G11650.2	genome	OGE	View CDS

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	Myb_DNA-binding	22.1	3.5e-07	700	741	1	44
TSSS-HHHHHHHHHHHHHTTTT-HHHHHHHHTTTS-HHHHHHHH CS Myb_DNA-binding 1 rgrWTteEdellvdavkqlGggtWktIartmgkgRtlkqcksrw 44 r +W++ + +l++++ +q+G++ ++ I + ++ ++++q++ ++ LPERR02G11650.2 700 RAKWSKSDTDLFYQGLRQFGSD-FAMIQHLFP-DKSRNQVRQKF 741 569*****************.*****.******998 PP

Protein Features ? help Back to Top

Database	Entry ID	E-value	Start	End	InterPro ID	Description
SuperFamily	SSF46689	1.05E-9	691	747	IPR009057	Homeodomain-like
Pfam	PF15963	2.8E-25	693	774	No hit	No description
SMART	SM00717	8.6E-9	699	747	IPR001005	SANT/Myb domain
CDD	cd00167	4.05E-6	702	742	No hit	No description

Gene Ontology ? help Back to Top
GO Term	GO Category	GO Description
GO:0003677	Molecular Function	DNA binding

Sequence ? help Back to Top
Protein Sequence Length: 850 aa Download sequence Send to blast
MIDDEADFGN IIDAPAEGQT AAKFRPKVRA KPRKTSVPSR PLVPQTNVES TDETVKTLDK 60 DNTSQKQSID QKAAFLGYHG SETVTDACAS GGMLDIPSED VVTVSLGLVS NPDGALDSST 120 VCTSSVHKFS ENEEHINDSS DVVTHKESMV VLDTQIPQTC SSGKTIDDLA DFERLCDGTQ 180 AEEERVSKFQ PKNRAKTSKA TSKSRRTDQK AGASTGDVIL QSKEDGKNQA GCSDKLQHPP 240 SRHQETVQIP HSQAHLGAHD STIDDIVNFH SIIEEPAQKE VAANFQPNLR LKAGGASPGV 300 AETSDAAAVV TPEFGFSSVD VVSQDAEEDS HREGFRDDSC QKHMDEEAIT VSDTGPPQDL 360 DATVDLDSHA EMLNSHPDGS PSIIGERSVE ATVKFQPYAR RKKGKGKSVS FAPPNDSDVV 420 TPTDTNSDRS NLIHSCQDIA IGENLSNLPQ KAAEKVCITD EHHLDDQEYS YTENQYHEGE 480 PSDHVIEQEL KRDVRETGTS MKLRSREKLQ KDGIREHTAD DNMDEDYAEP PSNEQDNDSG 540 DEYTAGGKQK GRRKPREKNI SKEPSRGTKR TLGDSTIEES QKQKVQKNKS KASSGGQKET 600 SKDSSVEKPE KKLTHRIRQK RMKEVKTLLE TPDHEINRMK LSGKEIPSGL SSSNHSSSQF 660 EDMDDGFNEQ ENWDNDRTEN HVVENATKLN YHSYMNRQKR AKWSKSDTDL FYQGLRQFGS 720 DFAMIQHLFP DKSRNQVRQK FKAEERRHPM QVHDAIMHRS RDNLYFKQVI KQLNIEDVQP 780 DVNNTHEQEG APNEEDPGKK NISGEFINEE EENGSNWSDK DLDMHGSEFE EKEHFSTNAD 840 DDLGDVFDWY

Sequence ? help Back to Top

Protein Sequence Length: 850 aa Download sequence Send to blast

MIDDEADFGN IIDAPAEGQT AAKFRPKVRA KPRKTSVPSR PLVPQTNVES TDETVKTLDK  60
DNTSQKQSID QKAAFLGYHG SETVTDACAS GGMLDIPSED VVTVSLGLVS NPDGALDSST  120
VCTSSVHKFS ENEEHINDSS DVVTHKESMV VLDTQIPQTC SSGKTIDDLA DFERLCDGTQ  180
AEEERVSKFQ PKNRAKTSKA TSKSRRTDQK AGASTGDVIL QSKEDGKNQA GCSDKLQHPP  240
SRHQETVQIP HSQAHLGAHD STIDDIVNFH SIIEEPAQKE VAANFQPNLR LKAGGASPGV  300
AETSDAAAVV TPEFGFSSVD VVSQDAEEDS HREGFRDDSC QKHMDEEAIT VSDTGPPQDL  360
DATVDLDSHA EMLNSHPDGS PSIIGERSVE ATVKFQPYAR RKKGKGKSVS FAPPNDSDVV  420
TPTDTNSDRS NLIHSCQDIA IGENLSNLPQ KAAEKVCITD EHHLDDQEYS YTENQYHEGE  480
PSDHVIEQEL KRDVRETGTS MKLRSREKLQ KDGIREHTAD DNMDEDYAEP PSNEQDNDSG  540
DEYTAGGKQK GRRKPREKNI SKEPSRGTKR TLGDSTIEES QKQKVQKNKS KASSGGQKET  600
SKDSSVEKPE KKLTHRIRQK RMKEVKTLLE TPDHEINRMK LSGKEIPSGL SSSNHSSSQF  660
EDMDDGFNEQ ENWDNDRTEN HVVENATKLN YHSYMNRQKR AKWSKSDTDL FYQGLRQFGS  720
DFAMIQHLFP DKSRNQVRQK FKAEERRHPM QVHDAIMHRS RDNLYFKQVI KQLNIEDVQP  780
DVNNTHEQEG APNEEDPGKK NISGEFINEE EENGSNWSDK DLDMHGSEFE EKEHFSTNAD  840
DDLGDVFDWY

Cis-element ? help Back to Top
Source	Link
PlantRegMap	LPERR02G11650.2

Regulation -- PlantRegMap ? help Back to Top
Source	Upstream Regulator	Target Gene
PlantRegMap	Retrieve	-

Annotation -- Nucleotide ? help Back to Top
Source	Hit ID	E-value	Description
GenBank	AC096856	1e-179	AC096856.7 Oryza sativa chromosome 3 BAC OSJNBa0075M12 genomic sequence, complete sequence.
GenBank	AP014959	1e-179	AP014959.1 Oryza sativa Japonica Group DNA, chromosome 3, cultivar: Nipponbare, complete sequence.

Annotation -- Protein ? help Back to Top
Source	Hit ID	E-value	Description
Refseq	XP_015633004.1	0.0	uncharacterized protein LOC9267825
TrEMBL	A0A0D9VFB3	0.0	A0A0D9VFB3_9ORYZ; Uncharacterized protein
STRING	LPERR02G11650.2	0.0	(Leersia perrieri)

Orthologous Group ? help Back to Top
Lineage	Orthologous Group ID	Taxa Number	Gene Number
Monocots	OGMP2595	29	46

Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID	E-value	Description
AT4G39160.1	2e-32	MYB_related family protein