PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
Home  TFext  BLAST  Prediction  Download  Help  About  Links  PlantRegMap
(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID LPERR02G12290.2
Organism
Leersia perrieri
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Poales; Poaceae; BOP clade; Oryzoideae; Oryzeae; Oryzinae; Leersia
Family bHLH
Protein Properties Length: 356aa    MW: 39435.5 Da    PI: 5.2875
Description bHLH family protein
Gene Model
Gene Model ID Type Source Coding Sequence
LPERR02G12290.2genomeOGEView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1HLH30.75.8e-104392154
                     CHHHHHHHHHHHHHHHHHHHHHHHCTSCCC...TTS-STCHHHHHHHHHHHHHH CS
              HLH  1 rrrahnerErrRRdriNsafeeLrellPkaskapskKlsKaeiLekAveYIksL 54
                     r++ +  rE+ RRd++N+ f+eL   l ++     ++++Ka+iL  A++ +k+L
  LPERR02G12290.2 43 RKVQKADREKMRRDKLNEQFQELGGTLDPD----RPRNDKATILGDAIQMLKDL 92
                     5677889********************997....799***************98 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
CDDcd000832.87E-74196No hitNo description
PROSITE profilePS5088812.764292IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
SuperFamilySSF474592.75E-1343112IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
PfamPF000109.6E-84392IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
Gene3DG3DSA:4.10.280.105.1E-1343115IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
SMARTSM003533.2E-74898IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0046983Molecular Functionprotein dimerization activity
Sequence ? help Back to Top
Protein Sequence    Length: 356 aa     Download sequence    Send to blast
MDPRSHHHQT PREDGFFHPS DGACPAESSG RTECKSQGLT VMRKVQKADR EKMRRDKLNE  60
QFQELGGTLD PDRPRNDKAT ILGDAIQMLK DLTSQVNKLK AEYTSLSEEA RELTQEKNEL  120
RDEKASLKFE VDNLNTQYQQ RMRVLYPWTG MEPSVVIGPP PAYPFSVPVP IPSGVVPIHP  180
QLQAYPYFRN QTSGTVPNPG TPYMVYTQPV RPPTDQPSNQ FNDPVQHSSS NRSHSMVQDC  240
RRKLSTLQQA SCRGESEFDD VATDLELKTP GSSVALQPEV ANTSKSGGDE PTFSCLSFSQ  300
DSSSDLKKKQ CIQETNGSTL TEGSSSSRCS SSGPPDVSNS VEDESVADDH RSTVQI
Cis-element ? help Back to Top
SourceLink
PlantRegMapLPERR02G12290.2
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Nucleotide ? help Back to Top
Source Hit ID E-value Description
GenBankAK0697900.0AK069790.1 Oryza sativa Japonica Group cDNA clone:J023031O20, full insert sequence.
GenBankAK1039860.0AK103986.1 Oryza sativa Japonica Group cDNA clone:001-017-H10, full insert sequence.
GenBankHQ8588500.0HQ858850.1 Oryza sativa Japonica Group isolate UT1613 bHLH transcription factor mRNA, partial cds.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_006665082.10.0PREDICTED: transcription factor bHLH121-like isoform X1
TrEMBLA0A0D9VFK10.0A0A0D9VFK1_9ORYZ; Uncharacterized protein
STRINGLPERR02G12290.20.0(Leersia perrieri)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MonocotsOGMP117672529
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT3G19860.16e-57bHLH family protein