PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID LPERR02G12580.1
Organism
Leersia perrieri
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Poales; Poaceae; BOP clade; Oryzoideae; Oryzeae; Oryzinae; Leersia
Family B3
Protein Properties Length: 238aa    MW: 26313.1 Da    PI: 8.9413
Description B3 family protein
Gene Model
Gene Model ID Type Source Coding Sequence
LPERR02G12580.1genomeOGEView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1B351.91.4e-1631127193
                      EEEE-..-HHHHT.T-EE--HHH.HTT...---..--SEEEEEE..TTS-EEEEEE..EEETTEEEE-TTHHHHHHHHT--TT-EEEEEE-SSS CS
               B3   1 ffkvltpsdvlks.grlvlpkkfaeeh...ggkkeesktltled..esgrsWevkliyrkksgryvltkGWkeFvkangLkegDfvvFkldgrs 88 
                      f kvl+psdv+    +lv+p++++ +    ++++e+ + +++ed   sg+ W++++  +++   + ltkGW  Fv+++gL+ gD+v F + g+ 
  LPERR02G12580.1  31 FGKVLMPSDVSWVtEQLVIPNNHVGKLrvvDKDQEGFFVVVVEDgaVSGKIWRFRY-LNRNNVDHCLTKGWGCFVREKGLRPGDTVSFFRGGNA 123
                      67999****9965589********999**9888889999999*988899*******.566667799**********************977763 PP

                      EE..E CS
               B3  89 efelv 93 
                      +++ +
  LPERR02G12580.1 124 RER-L 127
                      333.3 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
Gene3DG3DSA:2.40.330.101.1E-2026140IPR015300DNA-binding pseudobarrel domain
SuperFamilySSF1019366.08E-1829134IPR015300DNA-binding pseudobarrel domain
CDDcd100178.52E-1730132No hitNo description
PfamPF023625.2E-1331130IPR003340B3 DNA binding domain
SMARTSM010199.5E-731134IPR003340B3 DNA binding domain
PROSITE profilePS5086311.29332133IPR003340B3 DNA binding domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0006355Biological Processregulation of transcription, DNA-templated
GO:0005634Cellular Componentnucleus
GO:0003677Molecular FunctionDNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 238 aa     Download sequence    Send to blast
MAASLPLPTS IHDGAEVPDD KDQVVEMKYL FGKVLMPSDV SWVTEQLVIP NNHVGKLRVV  60
DKDQEGFFVV VVEDGAVSGK IWRFRYLNRN NVDHCLTKGW GCFVREKGLR PGDTVSFFRG  120
GNARERLFIF CNRGTTTTTS HHCLPPPARD LPSSGHGEVG GSTPAARPPP PLVSPRRRRR  180
GTVHPEGEEP TTEMPMILES MTLVGAPPLA KRVRLFGVYI NVPPQQPSGG EPERKYNP
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
1wid_A8e-143012913112DNA-binding protein RAV1
Search in ModeBase
Cis-element ? help Back to Top
SourceLink
PlantRegMapLPERR02G12580.1
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_015624416.15e-71putative B3 domain-containing protein Os02g0455900
SwissprotQ6K3B15e-72Y2559_ORYSJ; Putative B3 domain-containing protein Os02g0455900
TrEMBLA0A0D9VFN81e-174A0A0D9VFN8_9ORYZ; Uncharacterized protein
STRINGLPERR02G12580.11e-175(Leersia perrieri)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MonocotsOGMP151591316
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT4G01500.12e-16B3 family protein